Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5089

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
2,103,568	+		GFF5088	0.37	-0.1
2,103,568	+		GFF5088	0.37	-0.3
2,103,701	-		GFF5088	0.53	-0.4
2,103,841	+		GFF5088	0.70	+0.1
2,103,995	-		GFF5088	0.89	+0.2
2,104,165	+				+0.2
2,104,165	+				+0.2
2,104,166	-				+0.1
2,105,146	+		GFF5089	0.66	-0.6
2,105,146	+		GFF5089	0.66	-0.4
2,105,213	+		GFF5089	0.71	-1.1
2,106,218	+				+1.1
2,106,219	-				-0.8
2,106,219	-				-0.1
2,106,219	-				+0.8
2,106,239	-				+0.5
2,106,239	-				+0.1
2,106,250	-				-1.9
2,106,274	-				-0.9
2,106,292	+				-0.3
2,106,307	+				+0.1
2,106,308	-				+0.4
2,106,328	+				-0.5
2,106,482	-		GFF5091	0.21	+0.9