Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5004

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
2,017,993	-		GFF5002	0.18	+1.1
2,018,630	+		GFF5003	0.42	+0.5
2,018,726	+		GFF5003	0.61	+0.4
2,018,896	+				+0.1
2,018,897	+				-0.3
2,018,897	+				-0.1
2,018,928	-				-0.1
2,019,012	-				+0.4
2,019,113	+		GFF5004	0.17	-0.8
2,019,114	-		GFF5004	0.17	+0.3
2,019,114	-		GFF5004	0.17	-0.1
2,019,191	+		GFF5004	0.24	+1.0
2,019,211	+		GFF5004	0.26	-0.3
2,019,297	+		GFF5004	0.34	+0.1
2,019,329	+		GFF5004	0.37	+0.0
2,019,330	-		GFF5004	0.38	+0.8
2,019,330	-		GFF5004	0.38	-0.1
2,019,539	+		GFF5004	0.57	+0.5
2,019,539	+		GFF5004	0.57	+1.0
2,019,540	-		GFF5004	0.57	-0.3
2,019,540	-		GFF5004	0.57	+0.2
2,019,608	+		GFF5004	0.64	+0.1
2,019,609	-		GFF5004	0.64	-1.4
2,019,635	+		GFF5004	0.66	-0.3
2,019,636	-		GFF5004	0.66	+0.3
2,019,636	-		GFF5004	0.66	-0.6
2,019,975	-				-0.1
2,020,040	+				-0.2
2,020,162	+				-0.1
2,020,436	+		GFF5005	0.38	+0.4
2,020,610	+		GFF5005	0.62	-0.3
2,020,611	-		GFF5005	0.62	-0.0
2,020,885	+				+0.2