Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4928

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
1,943,771	+				+0.2
1,943,771	+				-0.5
1,943,772	-				+0.4
1,943,916	+				-1.8
1,943,916	+				+0.6
1,943,916	+				-0.4
1,943,917	-				-0.0
1,943,917	-				+0.2
1,944,100	+		GFF4927	0.21	-0.2
1,944,101	-		GFF4927	0.21	+0.3
1,944,389	-		GFF4927	0.58	+0.4
1,944,389	-		GFF4927	0.58	-0.2
1,944,389	-		GFF4927	0.58	-1.2
1,944,706	+				+0.5
1,944,706	+				-0.3
1,944,707	-				-0.8
1,944,707	-				+0.6
1,944,935	+		GFF4928	0.26	-0.5
1,944,935	+		GFF4928	0.26	-0.4
1,945,176	-		GFF4928	0.63	-1.0
1,945,532	-				-0.8
1,945,792	+				-0.3
1,945,792	-				-0.4
1,945,793	-				+0.1
1,945,793	-				-0.2
1,945,815	+				-0.2
1,945,815	+				+0.1
1,945,815	+				-0.0
1,945,815	+				-0.0
1,945,816	-				+0.5
1,945,816	-				+1.0
1,945,857	+				-0.7
1,945,857	+				-0.0
1,945,858	-				+2.1
1,945,858	-				-0.7
1,945,858	-				+0.3
1,945,858	-				-0.6
1,945,858	-				+1.0
1,946,050	+		GFF4930	0.11	+0.7
1,946,287	+		GFF4930	0.43	+0.9
1,946,287	+		GFF4930	0.43	+1.1
1,946,288	-		GFF4930	0.43	-0.9
1,946,288	-		GFF4930	0.43	-0.8