Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4479

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
1,407,334	+		GFF4478	0.28	-0.2
1,407,619	+				-0.9
1,407,619	+				+0.8
1,407,620	-				-0.5
1,407,620	-				-0.1
1,407,620	-				-0.1
1,407,620	-				-0.2
1,407,905	+		GFF4479	0.21	-0.5
1,407,905	+		GFF4479	0.21	+0.4
1,407,905	+		GFF4479	0.21	+0.1
1,407,906	+		GFF4479	0.21	+0.3
1,407,906	-		GFF4479	0.21	+0.1
1,407,906	-		GFF4479	0.21	-1.8
1,407,906	-		GFF4479	0.21	-2.1
1,407,912	-		GFF4479	0.21	-0.6
1,408,002	+		GFF4479	0.31	-0.2
1,408,003	-		GFF4479	0.31	-0.2
1,408,383	-		GFF4479	0.71	-0.5
1,408,555	+		GFF4479	0.89	+0.5
1,408,555	+		GFF4479	0.89	-1.0
1,408,555	+		GFF4479	0.89	+0.0
1,408,556	-		GFF4479	0.89	-1.1
1,408,694	+				-0.5
1,408,695	-				-1.0
1,408,695	-				+0.8
1,408,784	+		GFF4480	0.22	-0.9
1,408,784	+		GFF4480	0.22	+0.0
1,408,784	+		GFF4480	0.22	+0.3
1,408,785	-		GFF4480	0.22	-0.7
1,408,785	-		GFF4480	0.22	+1.1
1,408,785	-		GFF4480	0.22	+0.0
1,409,090	+				-0.1
1,409,090	+				+0.6
1,409,091	-				+0.8
1,409,180	+				+0.3
1,409,180	+				+0.7
1,409,181	-				-0.3
1,409,181	-				+0.3
1,409,181	-				-0.8
1,409,181	-				-0.1
1,409,186	+				-0.2
1,409,186	+				-0.1