Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4178

Experiment: Ying_AminoAcid20 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4176 and GFF4177 overlap by 4 nucleotidesGFF4177 and GFF4178 overlap by 4 nucleotidesGFF4178 and GFF4179 are separated by 15 nucleotides GFF4176 - Conjugative transfer protein TrbB, at 1,092,901 to 1,093,953 GFF4176 GFF4177 - Conjugative transfer protein TrbC, at 1,093,950 to 1,094,333 GFF4177 GFF4178 - Conjugative transfer protein TrbD, at 1,094,330 to 1,094,602 GFF4178 GFF4179 - Conjugative transfer protein TrbE, at 1,094,618 to 1,097,071 GFF4179 Position (kb) 1094 1095Strain fitness (log2 ratio) -1 0 1at 1093.760 kb on + strand, within GFF4176at 1093.761 kb on - strand, within GFF4176at 1093.761 kb on - strand, within GFF4176at 1094.328 kb on + strandat 1094.329 kb on + strandat 1094.329 kb on + strandat 1094.842 kb on - strandat 1095.035 kb on + strand, within GFF4179at 1095.173 kb on + strand, within GFF4179at 1095.383 kb on + strand, within GFF4179

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1
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1,093,760 + GFF4176 0.82 +1.5
1,093,761 - GFF4176 0.82 +0.2
1,093,761 - GFF4176 0.82 -0.0
1,094,328 + -0.3
1,094,329 + +0.3
1,094,329 + -0.2
1,094,842 - -0.1
1,095,035 + GFF4179 0.17 +0.5
1,095,173 + GFF4179 0.23 -0.1
1,095,383 + GFF4179 0.31 +0.2

Or see this region's nucleotide sequence