Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3992 and GFF3993 are separated by 1 nucleotides GFF3993 and GFF3994 overlap by 11 nucleotides GFF3994 and GFF3995 overlap by 17 nucleotides
GFF3992 - Biotin synthase (EC 2.8.1.6), at 907,674 to 908,726
GFF3992
GFF3993 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 908,728 to 910,107
GFF3993
GFF3994 - Dethiobiotin synthetase (EC 6.3.3.3), at 910,097 to 910,780
GFF3994
GFF3995 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 910,764 to 911,984
GFF3995
Position (kb) 908
909
910
911 Strain fitness (log2 ratio) -1
0
1
2 at 908.214 kb on + strand, within GFF3992 at 908.214 kb on + strand, within GFF3992 at 908.214 kb on + strand, within GFF3992 at 908.214 kb on + strand, within GFF3992 at 908.214 kb on + strand, within GFF3992 at 908.215 kb on - strand, within GFF3992 at 908.215 kb on - strand, within GFF3992 at 908.215 kb on - strand, within GFF3992 at 908.215 kb on - strand, within GFF3992 at 908.215 kb on - strand, within GFF3992 at 908.215 kb on - strand, within GFF3992 at 908.274 kb on + strand, within GFF3992 at 908.274 kb on + strand, within GFF3992 at 908.275 kb on - strand, within GFF3992 at 908.413 kb on - strand, within GFF3992 at 908.625 kb on + strand at 908.884 kb on + strand, within GFF3993 at 908.884 kb on + strand, within GFF3993 at 909.238 kb on + strand, within GFF3993 at 909.238 kb on + strand, within GFF3993 at 909.238 kb on + strand, within GFF3993 at 909.238 kb on + strand, within GFF3993 at 909.239 kb on - strand, within GFF3993 at 909.239 kb on - strand, within GFF3993 at 909.239 kb on - strand, within GFF3993 at 909.442 kb on + strand, within GFF3993 at 909.446 kb on + strand, within GFF3993 at 909.447 kb on - strand, within GFF3993 at 909.641 kb on - strand, within GFF3993 at 909.653 kb on - strand, within GFF3993 at 909.694 kb on + strand, within GFF3993 at 909.694 kb on + strand, within GFF3993 at 909.694 kb on + strand, within GFF3993 at 909.695 kb on - strand, within GFF3993 at 909.964 kb on + strand, within GFF3993 at 909.964 kb on + strand, within GFF3993 at 910.908 kb on + strand, within GFF3995 at 910.908 kb on + strand, within GFF3995 at 910.968 kb on + strand, within GFF3995 at 911.073 kb on + strand, within GFF3995 at 911.074 kb on - strand, within GFF3995 at 911.088 kb on + strand, within GFF3995
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 908,214 + GFF3992 0.51 -0.7 908,214 + GFF3992 0.51 +0.1 908,214 + GFF3992 0.51 -0.1 908,214 + GFF3992 0.51 +1.3 908,214 + GFF3992 0.51 -0.1 908,215 - GFF3992 0.51 +0.2 908,215 - GFF3992 0.51 +0.6 908,215 - GFF3992 0.51 +0.1 908,215 - GFF3992 0.51 -0.1 908,215 - GFF3992 0.51 -0.2 908,215 - GFF3992 0.51 +0.1 908,274 + GFF3992 0.57 +0.4 908,274 + GFF3992 0.57 +0.2 908,275 - GFF3992 0.57 -0.5 908,413 - GFF3992 0.70 -0.1 908,625 + +0.9 908,884 + GFF3993 0.11 +0.1 908,884 + GFF3993 0.11 -0.3 909,238 + GFF3993 0.37 +0.5 909,238 + GFF3993 0.37 +0.5 909,238 + GFF3993 0.37 +0.3 909,238 + GFF3993 0.37 +1.9 909,239 - GFF3993 0.37 -0.1 909,239 - GFF3993 0.37 -0.5 909,239 - GFF3993 0.37 -0.3 909,442 + GFF3993 0.52 -0.1 909,446 + GFF3993 0.52 +0.1 909,447 - GFF3993 0.52 -0.2 909,641 - GFF3993 0.66 +0.6 909,653 - GFF3993 0.67 +0.9 909,694 + GFF3993 0.70 +0.2 909,694 + GFF3993 0.70 -0.8 909,694 + GFF3993 0.70 -0.2 909,695 - GFF3993 0.70 -0.1 909,964 + GFF3993 0.90 +0.6 909,964 + GFF3993 0.90 +0.4 910,908 + GFF3995 0.12 -1.1 910,908 + GFF3995 0.12 +0.0 910,968 + GFF3995 0.17 -0.1 911,073 + GFF3995 0.25 -0.2 911,074 - GFF3995 0.25 -0.1 911,088 + GFF3995 0.27 +0.9
Or see this region's nucleotide sequence