Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3977

Experiment: Ying_AminoAcid20 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3976 and GFF3977 overlap by 19 nucleotidesGFF3977 and GFF3978 overlap by 4 nucleotidesGFF3978 and GFF3979 overlap by 8 nucleotides GFF3976 - Outer membrane vitamin B12 receptor BtuB, at 890,865 to 892,757 GFF3976 GFF3977 - Cobyrinic acid A,C-diamide synthase, at 892,739 to 894,076 GFF3977 GFF3978 - Periplasmic binding protein, at 894,073 to 894,894 GFF3978 GFF3979 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 894,887 to 895,441 GFF3979 Position (kb) 892 893 894 895Strain fitness (log2 ratio) -2 -1 0 1at 893.529 kb on - strand, within GFF3977at 893.529 kb on - strand, within GFF3977at 893.529 kb on - strand, within GFF3977at 893.978 kb on + strandat 893.979 kb on - strandat 894.005 kb on + strandat 894.005 kb on + strandat 894.005 kb on + strandat 894.006 kb on - strandat 894.010 kb on - strandat 894.139 kb on + strandat 894.140 kb on - strandat 894.181 kb on + strand, within GFF3978at 894.181 kb on + strand, within GFF3978

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1
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893,529 - GFF3977 0.59 -0.3
893,529 - GFF3977 0.59 -1.5
893,529 - GFF3977 0.59 -0.9
893,978 + +0.4
893,979 - +0.1
894,005 + +0.7
894,005 + -0.5
894,005 + -0.3
894,006 - -1.9
894,010 - -0.5
894,139 + -0.6
894,140 - +1.1
894,181 + GFF3978 0.13 -0.5
894,181 + GFF3978 0.13 -0.8

Or see this region's nucleotide sequence