Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3944

Experiment: Ying_AminoAcid20 rep A; time point 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3943 and GFF3944 are separated by 386 nucleotidesGFF3944 and GFF3945 overlap by 8 nucleotidesGFF3945 and GFF3946 are separated by 112 nucleotides GFF3943 - Aldehyde dehydrogenase (EC 1.2.1.3); Probable coniferyl aldehyde dehydrogenase (EC 1.2.1.68), at 856,905 to 858,335 GFF3943 GFF3944 - Rhs family protein, at 858,722 to 859,222 GFF3944 GFF3945 - hypothetical protein, at 859,215 to 859,469 GFF3945 GFF3946 - Transcriptional regulator, AraC family, at 859,582 to 860,343 GFF3946 Position (kb) 858 859 860Strain fitness (log2 ratio) -2 -1 0 1at 857.725 kb on - strand, within GFF3943at 857.725 kb on - strand, within GFF3943at 857.988 kb on + strand, within GFF3943at 858.048 kb on + strand, within GFF3943at 858.192 kb on + strand, within GFF3943at 858.192 kb on + strand, within GFF3943at 858.193 kb on - strandat 858.276 kb on + strandat 858.277 kb on - strandat 858.363 kb on + strandat 858.363 kb on + strandat 858.364 kb on - strandat 858.398 kb on + strandat 858.398 kb on + strandat 858.401 kb on + strandat 858.402 kb on - strandat 858.444 kb on + strandat 858.507 kb on + strandat 858.767 kb on + strandat 858.767 kb on + strandat 858.768 kb on - strandat 858.884 kb on + strand, within GFF3944at 858.885 kb on - strand, within GFF3944at 858.965 kb on + strand, within GFF3944at 858.965 kb on + strand, within GFF3944at 859.283 kb on - strand, within GFF3945at 859.283 kb on - strand, within GFF3945at 859.283 kb on - strand, within GFF3945at 859.450 kb on + strandat 859.450 kb on + strandat 859.534 kb on + strandat 859.534 kb on + strandat 859.534 kb on + strandat 859.535 kb on - strandat 859.535 kb on - strandat 859.535 kb on - strandat 859.677 kb on - strand, within GFF3946at 859.725 kb on + strand, within GFF3946at 859.725 kb on + strand, within GFF3946at 859.725 kb on + strand, within GFF3946at 859.725 kb on + strand, within GFF3946at 859.725 kb on + strand, within GFF3946at 859.725 kb on + strand, within GFF3946at 859.726 kb on - strand, within GFF3946at 859.726 kb on - strand, within GFF3946at 859.726 kb on - strand, within GFF3946at 859.726 kb on - strand, within GFF3946at 859.726 kb on - strand, within GFF3946at 859.726 kb on - strand, within GFF3946at 859.726 kb on - strand, within GFF3946at 859.769 kb on + strand, within GFF3946at 859.769 kb on + strand, within GFF3946at 859.769 kb on + strand, within GFF3946at 859.769 kb on + strand, within GFF3946at 859.769 kb on + strand, within GFF3946at 859.770 kb on - strand, within GFF3946at 859.770 kb on - strand, within GFF3946at 860.111 kb on + strand, within GFF3946at 860.111 kb on + strand, within GFF3946at 860.112 kb on - strand, within GFF3946at 860.112 kb on - strand, within GFF3946at 860.112 kb on - strand, within GFF3946at 860.201 kb on + strand, within GFF3946at 860.201 kb on + strand, within GFF3946at 860.201 kb on + strand, within GFF3946at 860.201 kb on + strand, within GFF3946at 860.202 kb on - strand, within GFF3946at 860.202 kb on - strand, within GFF3946at 860.202 kb on - strand, within GFF3946at 860.202 kb on - strand, within GFF3946

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1
remove
857,725 - GFF3943 0.57 +0.3
857,725 - GFF3943 0.57 +0.1
857,988 + GFF3943 0.76 +0.1
858,048 + GFF3943 0.80 +0.6
858,192 + GFF3943 0.90 -0.2
858,192 + GFF3943 0.90 -1.1
858,193 - -0.7
858,276 + -0.2
858,277 - -0.5
858,363 + -1.6
858,363 + -0.5
858,364 - -0.1
858,398 + -0.8
858,398 + -0.1
858,401 + -0.3
858,402 - -0.3
858,444 + +0.2
858,507 + -0.8
858,767 + -0.2
858,767 + -0.4
858,768 - +0.2
858,884 + GFF3944 0.32 -0.2
858,885 - GFF3944 0.33 -0.3
858,965 + GFF3944 0.49 +0.1
858,965 + GFF3944 0.49 -0.2
859,283 - GFF3945 0.27 +0.4
859,283 - GFF3945 0.27 +0.3
859,283 - GFF3945 0.27 -0.5
859,450 + -0.4
859,450 + +0.3
859,534 + +0.5
859,534 + -0.2
859,534 + -1.2
859,535 - -0.4
859,535 - -0.1
859,535 - -0.4
859,677 - GFF3946 0.12 -0.1
859,725 + GFF3946 0.19 -0.1
859,725 + GFF3946 0.19 -0.3
859,725 + GFF3946 0.19 +0.4
859,725 + GFF3946 0.19 -0.9
859,725 + GFF3946 0.19 -0.2
859,725 + GFF3946 0.19 -0.3
859,726 - GFF3946 0.19 -0.4
859,726 - GFF3946 0.19 +0.0
859,726 - GFF3946 0.19 -2.3
859,726 - GFF3946 0.19 +0.6
859,726 - GFF3946 0.19 -0.5
859,726 - GFF3946 0.19 +0.1
859,726 - GFF3946 0.19 -0.1
859,769 + GFF3946 0.25 -0.2
859,769 + GFF3946 0.25 -0.1
859,769 + GFF3946 0.25 +0.2
859,769 + GFF3946 0.25 +1.2
859,769 + GFF3946 0.25 +0.1
859,770 - GFF3946 0.25 -0.9
859,770 - GFF3946 0.25 +0.6
860,111 + GFF3946 0.69 -0.5
860,111 + GFF3946 0.69 -0.3
860,112 - GFF3946 0.70 +0.1
860,112 - GFF3946 0.70 +0.3
860,112 - GFF3946 0.70 -0.8
860,201 + GFF3946 0.81 +0.6
860,201 + GFF3946 0.81 +0.5
860,201 + GFF3946 0.81 -0.5
860,201 + GFF3946 0.81 +0.1
860,202 - GFF3946 0.81 +0.1
860,202 - GFF3946 0.81 -0.4
860,202 - GFF3946 0.81 +0.2
860,202 - GFF3946 0.81 +0.0

Or see this region's nucleotide sequence