Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF389 and GFF390 are separated by 228 nucleotides GFF390 and GFF391 are separated by 168 nucleotides
GFF389 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 56,329 to 57,438
GFF389
GFF390 - Rhodanese-related sulfurtransferase, at 57,667 to 58,791
GFF390
GFF391 - 8-amino-7-oxononanoate synthase (EC 2.3.1.47), at 58,960 to 60,225
GFF391
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.981 kb on + strand, within GFF389 at 56.981 kb on + strand, within GFF389 at 56.981 kb on + strand, within GFF389 at 56.982 kb on - strand, within GFF389 at 56.982 kb on - strand, within GFF389 at 56.982 kb on - strand, within GFF389 at 56.982 kb on - strand, within GFF389 at 56.982 kb on - strand, within GFF389 at 57.011 kb on + strand, within GFF389 at 57.012 kb on - strand, within GFF389 at 57.012 kb on - strand, within GFF389 at 57.012 kb on - strand, within GFF389 at 57.044 kb on + strand, within GFF389 at 57.044 kb on + strand, within GFF389 at 57.044 kb on + strand, within GFF389 at 57.044 kb on + strand, within GFF389 at 57.045 kb on - strand, within GFF389 at 57.045 kb on - strand, within GFF389 at 57.129 kb on - strand, within GFF389 at 57.129 kb on - strand, within GFF389 at 57.284 kb on + strand, within GFF389 at 57.285 kb on - strand, within GFF389 at 57.285 kb on - strand, within GFF389 at 57.587 kb on - strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.706 kb on + strand at 57.707 kb on - strand at 57.707 kb on - strand at 57.707 kb on - strand at 57.707 kb on - strand at 57.707 kb on - strand at 57.707 kb on - strand at 57.707 kb on - strand at 57.707 kb on - strand at 57.712 kb on + strand at 57.712 kb on + strand at 57.712 kb on + strand at 57.712 kb on + strand at 57.712 kb on + strand at 57.712 kb on + strand at 57.713 kb on - strand at 57.713 kb on - strand at 57.713 kb on - strand at 57.713 kb on - strand at 57.713 kb on - strand at 57.713 kb on - strand at 57.713 kb on - strand at 57.713 kb on - strand at 57.713 kb on - strand at 57.802 kb on + strand, within GFF390 at 57.802 kb on + strand, within GFF390 at 58.183 kb on + strand, within GFF390 at 58.184 kb on - strand, within GFF390 at 58.230 kb on + strand, within GFF390 at 58.230 kb on + strand, within GFF390 at 58.230 kb on + strand, within GFF390 at 58.231 kb on - strand, within GFF390 at 58.231 kb on - strand, within GFF390 at 58.231 kb on - strand, within GFF390 at 58.411 kb on + strand, within GFF390 at 58.411 kb on + strand, within GFF390 at 58.411 kb on + strand, within GFF390 at 58.412 kb on - strand, within GFF390 at 58.412 kb on - strand, within GFF390 at 58.690 kb on + strand at 58.690 kb on + strand at 58.690 kb on + strand at 58.690 kb on + strand at 58.690 kb on + strand at 58.690 kb on + strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.691 kb on - strand at 58.873 kb on + strand at 58.874 kb on - strand at 58.874 kb on - strand at 58.927 kb on + strand at 58.927 kb on + strand at 58.927 kb on + strand at 58.939 kb on - strand at 58.939 kb on - strand at 58.940 kb on + strand at 58.948 kb on - strand at 59.137 kb on + strand, within GFF391 at 59.137 kb on + strand, within GFF391 at 59.137 kb on + strand, within GFF391 at 59.138 kb on - strand, within GFF391 at 59.317 kb on + strand, within GFF391 at 59.318 kb on - strand, within GFF391 at 59.318 kb on - strand, within GFF391 at 59.361 kb on + strand, within GFF391 at 59.362 kb on - strand, within GFF391 at 59.362 kb on - strand, within GFF391 at 59.362 kb on - strand, within GFF391 at 59.362 kb on - strand, within GFF391 at 59.371 kb on + strand, within GFF391 at 59.371 kb on + strand, within GFF391 at 59.371 kb on + strand, within GFF391 at 59.371 kb on + strand, within GFF391 at 59.372 kb on - strand, within GFF391 at 59.372 kb on - strand, within GFF391 at 59.518 kb on + strand, within GFF391 at 59.518 kb on + strand, within GFF391 at 59.518 kb on + strand, within GFF391 at 59.518 kb on + strand, within GFF391 at 59.518 kb on + strand, within GFF391 at 59.518 kb on + strand, within GFF391 at 59.519 kb on - strand, within GFF391 at 59.519 kb on - strand, within GFF391 at 59.519 kb on - strand, within GFF391 at 59.519 kb on - strand, within GFF391 at 59.749 kb on + strand, within GFF391 at 59.750 kb on - strand, within GFF391 at 59.752 kb on + strand, within GFF391 at 59.752 kb on + strand, within GFF391 at 59.752 kb on + strand, within GFF391 at 59.752 kb on + strand, within GFF391 at 59.752 kb on + strand, within GFF391 at 59.752 kb on + strand, within GFF391 at 59.752 kb on + strand, within GFF391 at 59.752 kb on + strand, within GFF391 at 59.752 kb on + strand, within GFF391 at 59.752 kb on + strand, within GFF391 at 59.753 kb on - strand, within GFF391 at 59.753 kb on - strand, within GFF391 at 59.753 kb on - strand, within GFF391 at 59.753 kb on - strand, within GFF391 at 59.753 kb on - strand, within GFF391 at 59.753 kb on - strand, within GFF391 at 59.778 kb on + strand, within GFF391 at 59.778 kb on + strand, within GFF391
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 56,981 + GFF389 0.59 -0.1 56,981 + GFF389 0.59 +0.3 56,981 + GFF389 0.59 -0.5 56,982 - GFF389 0.59 -0.6 56,982 - GFF389 0.59 +0.2 56,982 - GFF389 0.59 +1.1 56,982 - GFF389 0.59 +0.2 56,982 - GFF389 0.59 +1.0 57,011 + GFF389 0.61 +0.2 57,012 - GFF389 0.62 +0.5 57,012 - GFF389 0.62 -0.1 57,012 - GFF389 0.62 -1.2 57,044 + GFF389 0.64 -1.7 57,044 + GFF389 0.64 -1.3 57,044 + GFF389 0.64 +0.8 57,044 + GFF389 0.64 +0.1 57,045 - GFF389 0.65 +0.1 57,045 - GFF389 0.65 +0.1 57,129 - GFF389 0.72 -0.4 57,129 - GFF389 0.72 +0.1 57,284 + GFF389 0.86 -0.1 57,285 - GFF389 0.86 -0.1 57,285 - GFF389 0.86 +0.3 57,587 - +0.1 57,706 + +0.5 57,706 + +0.2 57,706 + +0.2 57,706 + +0.2 57,706 + -0.5 57,706 + -1.2 57,706 + +0.5 57,706 + +0.2 57,706 + +0.3 57,706 + +0.6 57,706 + -0.4 57,706 + +0.3 57,706 + +0.1 57,706 + -0.3 57,706 + -0.4 57,706 + +0.0 57,707 - +0.2 57,707 - +0.4 57,707 - +0.4 57,707 - +0.3 57,707 - +1.2 57,707 - +0.0 57,707 - -0.1 57,707 - +0.5 57,712 + -0.2 57,712 + -0.1 57,712 + -1.1 57,712 + +0.2 57,712 + +0.7 57,712 + +0.3 57,713 - +0.5 57,713 - -0.0 57,713 - -0.2 57,713 - +0.0 57,713 - -0.3 57,713 - +0.3 57,713 - +1.0 57,713 - +0.4 57,713 - +1.9 57,802 + GFF390 0.12 +0.2 57,802 + GFF390 0.12 +0.0 58,183 + GFF390 0.46 +0.3 58,184 - GFF390 0.46 +0.5 58,230 + GFF390 0.50 -0.4 58,230 + GFF390 0.50 -0.3 58,230 + GFF390 0.50 -0.4 58,231 - GFF390 0.50 +0.5 58,231 - GFF390 0.50 +0.2 58,231 - GFF390 0.50 +0.3 58,411 + GFF390 0.66 +0.2 58,411 + GFF390 0.66 +0.5 58,411 + GFF390 0.66 +0.2 58,412 - GFF390 0.66 +0.2 58,412 - GFF390 0.66 +0.7 58,690 + -0.1 58,690 + -0.5 58,690 + +0.3 58,690 + -1.7 58,690 + +1.1 58,690 + +0.6 58,691 - -1.1 58,691 - +0.2 58,691 - +0.1 58,691 - +0.8 58,691 - -0.3 58,691 - +0.2 58,691 - +0.7 58,691 - -1.8 58,691 - -0.4 58,691 - +0.1 58,691 - -0.3 58,873 + +0.4 58,874 - -0.9 58,874 - -0.1 58,927 + +0.9 58,927 + -0.4 58,927 + +0.4 58,939 - +0.9 58,939 - +0.4 58,940 + +0.3 58,948 - +0.3 59,137 + GFF391 0.14 +0.2 59,137 + GFF391 0.14 +0.5 59,137 + GFF391 0.14 +0.1 59,138 - GFF391 0.14 -0.0 59,317 + GFF391 0.28 +0.2 59,318 - GFF391 0.28 -0.3 59,318 - GFF391 0.28 +0.1 59,361 + GFF391 0.32 +0.3 59,362 - GFF391 0.32 +0.7 59,362 - GFF391 0.32 -0.2 59,362 - GFF391 0.32 +2.4 59,362 - GFF391 0.32 -0.4 59,371 + GFF391 0.32 -0.1 59,371 + GFF391 0.32 +0.0 59,371 + GFF391 0.32 +0.1 59,371 + GFF391 0.32 -0.4 59,372 - GFF391 0.33 -0.1 59,372 - GFF391 0.33 +0.6 59,518 + GFF391 0.44 +0.1 59,518 + GFF391 0.44 -0.3 59,518 + GFF391 0.44 -0.2 59,518 + GFF391 0.44 -0.5 59,518 + GFF391 0.44 -0.7 59,518 + GFF391 0.44 -0.4 59,519 - GFF391 0.44 +0.5 59,519 - GFF391 0.44 +0.2 59,519 - GFF391 0.44 +0.2 59,519 - GFF391 0.44 +0.0 59,749 + GFF391 0.62 -0.4 59,750 - GFF391 0.62 -0.0 59,752 + GFF391 0.63 +0.2 59,752 + GFF391 0.63 +1.2 59,752 + GFF391 0.63 +0.0 59,752 + GFF391 0.63 -0.5 59,752 + GFF391 0.63 -0.1 59,752 + GFF391 0.63 +0.3 59,752 + GFF391 0.63 -0.2 59,752 + GFF391 0.63 +0.1 59,752 + GFF391 0.63 +0.4 59,752 + GFF391 0.63 +0.1 59,753 - GFF391 0.63 -0.1 59,753 - GFF391 0.63 -0.4 59,753 - GFF391 0.63 +0.2 59,753 - GFF391 0.63 -0.1 59,753 - GFF391 0.63 -0.2 59,753 - GFF391 0.63 +0.2 59,778 + GFF391 0.65 -0.4 59,778 + GFF391 0.65 +1.2
Or see this region's nucleotide sequence