Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3779 and GFF3780 are separated by 53 nucleotides GFF3780 and GFF3781 are separated by 5 nucleotides GFF3781 and GFF3782 are separated by 23 nucleotides
GFF3779 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 677,247 to 678,380
GFF3779
GFF3780 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 678,434 to 678,853
GFF3780
GFF3781 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 678,859 to 679,623
GFF3781
GFF3782 - Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 679,647 to 680,894
GFF3782
Position (kb) 678
679 Strain fitness (log2 ratio) -1
0
1 at 677.470 kb on + strand, within GFF3779 at 677.470 kb on + strand, within GFF3779 at 677.509 kb on + strand, within GFF3779 at 677.510 kb on - strand, within GFF3779 at 677.522 kb on - strand, within GFF3779 at 677.675 kb on - strand, within GFF3779 at 677.675 kb on - strand, within GFF3779 at 678.633 kb on + strand, within GFF3780 at 678.633 kb on + strand, within GFF3780 at 678.633 kb on + strand, within GFF3780 at 679.145 kb on + strand, within GFF3781 at 679.146 kb on - strand, within GFF3781 at 679.146 kb on - strand, within GFF3781 at 679.146 kb on - strand, within GFF3781 at 679.271 kb on + strand, within GFF3781 at 679.272 kb on - strand, within GFF3781 at 679.623 kb on + strand at 679.624 kb on - strand at 679.717 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 677,470 + GFF3779 0.20 +0.1 677,470 + GFF3779 0.20 +0.2 677,509 + GFF3779 0.23 -0.1 677,510 - GFF3779 0.23 -0.1 677,522 - GFF3779 0.24 +0.3 677,675 - GFF3779 0.38 +0.3 677,675 - GFF3779 0.38 +0.3 678,633 + GFF3780 0.47 -0.5 678,633 + GFF3780 0.47 -0.8 678,633 + GFF3780 0.47 -1.2 679,145 + GFF3781 0.37 +0.5 679,146 - GFF3781 0.38 -0.2 679,146 - GFF3781 0.38 +0.6 679,146 - GFF3781 0.38 -0.2 679,271 + GFF3781 0.54 -0.2 679,272 - GFF3781 0.54 -0.3 679,623 + -0.0 679,624 - +0.3 679,717 + +0.4
Or see this region's nucleotide sequence