Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3766 and GFF3767 are separated by 38 nucleotides GFF3767 and GFF3768 are separated by 23 nucleotides GFF3768 and GFF3769 are separated by 85 nucleotides
GFF3766 - hypothetical protein, at 663,692 to 664,084
GFF3766
GFF3767 - hypothetical protein, at 664,123 to 664,629
GFF3767
GFF3768 - protein of unknown function DUF805, at 664,653 to 665,027
GFF3768
GFF3769 - Chaperone protein DnaJ, at 665,113 to 666,249
GFF3769
Position (kb) 664
665
666 Strain fitness (log2 ratio) -1
0
1
2
3 at 663.664 kb on + strand at 663.664 kb on + strand at 663.665 kb on - strand at 663.665 kb on - strand at 663.665 kb on - strand at 663.665 kb on - strand at 663.899 kb on + strand, within GFF3766 at 663.899 kb on + strand, within GFF3766 at 663.899 kb on + strand, within GFF3766 at 663.900 kb on - strand, within GFF3766 at 663.900 kb on - strand, within GFF3766 at 663.983 kb on + strand, within GFF3766 at 663.984 kb on - strand, within GFF3766 at 664.195 kb on + strand, within GFF3767 at 664.195 kb on + strand, within GFF3767 at 664.196 kb on - strand, within GFF3767 at 664.196 kb on - strand, within GFF3767 at 664.196 kb on - strand, within GFF3767 at 664.196 kb on - strand, within GFF3767 at 664.208 kb on - strand, within GFF3767 at 664.469 kb on - strand, within GFF3767 at 664.573 kb on + strand, within GFF3767 at 664.573 kb on + strand, within GFF3767 at 664.574 kb on - strand, within GFF3767 at 664.574 kb on - strand, within GFF3767 at 664.592 kb on + strand at 664.593 kb on - strand at 664.593 kb on - strand at 664.638 kb on - strand at 664.683 kb on + strand at 664.684 kb on - strand at 664.684 kb on - strand at 664.719 kb on + strand, within GFF3768 at 664.725 kb on + strand, within GFF3768 at 664.725 kb on + strand, within GFF3768 at 664.726 kb on - strand, within GFF3768 at 664.726 kb on - strand, within GFF3768 at 664.752 kb on + strand, within GFF3768 at 664.752 kb on + strand, within GFF3768 at 664.753 kb on - strand, within GFF3768 at 664.993 kb on - strand at 664.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 663,664 + +2.9 663,664 + -0.1 663,665 - -0.1 663,665 - -0.2 663,665 - -0.1 663,665 - +0.3 663,899 + GFF3766 0.53 +0.1 663,899 + GFF3766 0.53 -0.3 663,899 + GFF3766 0.53 +0.1 663,900 - GFF3766 0.53 +0.2 663,900 - GFF3766 0.53 +0.8 663,983 + GFF3766 0.74 -0.4 663,984 - GFF3766 0.74 -0.2 664,195 + GFF3767 0.14 +0.8 664,195 + GFF3767 0.14 -1.6 664,196 - GFF3767 0.14 -0.4 664,196 - GFF3767 0.14 -0.3 664,196 - GFF3767 0.14 -0.5 664,196 - GFF3767 0.14 -0.3 664,208 - GFF3767 0.17 +0.8 664,469 - GFF3767 0.68 +0.2 664,573 + GFF3767 0.89 -0.1 664,573 + GFF3767 0.89 -0.1 664,574 - GFF3767 0.89 +0.1 664,574 - GFF3767 0.89 -0.4 664,592 + -0.0 664,593 - -0.2 664,593 - -0.4 664,638 - +1.3 664,683 + -0.3 664,684 - +0.6 664,684 - +0.1 664,719 + GFF3768 0.18 -1.0 664,725 + GFF3768 0.19 +0.7 664,725 + GFF3768 0.19 -0.2 664,726 - GFF3768 0.19 -0.7 664,726 - GFF3768 0.19 -0.1 664,752 + GFF3768 0.26 -0.0 664,752 + GFF3768 0.26 -0.2 664,753 - GFF3768 0.27 -0.1 664,993 - +0.5 664,993 - +1.1
Or see this region's nucleotide sequence