Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3690 and GFF3691 overlap by 4 nucleotides GFF3691 and GFF3692 are separated by 40 nucleotides GFF3692 and GFF3693 are separated by 16 nucleotides
GFF3690 - NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3), at 580,052 to 580,702
GFF3690
GFF3691 - NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3), at 580,699 to 581,007
GFF3691
GFF3692 - NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3), at 581,048 to 583,099
GFF3692
GFF3693 - NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3), at 583,116 to 584,591
GFF3693
Position (kb) 581
582
583
584 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 580.101 kb on - strand at 580.101 kb on - strand at 580.130 kb on - strand, within GFF3690 at 580.476 kb on - strand, within GFF3690 at 580.490 kb on + strand, within GFF3690 at 581.432 kb on + strand, within GFF3692 at 581.433 kb on - strand, within GFF3692 at 581.666 kb on + strand, within GFF3692 at 582.203 kb on + strand, within GFF3692 at 582.204 kb on - strand, within GFF3692 at 582.741 kb on - strand, within GFF3692 at 582.774 kb on - strand, within GFF3692 at 582.779 kb on + strand, within GFF3692 at 582.780 kb on - strand, within GFF3692 at 582.780 kb on - strand, within GFF3692 at 582.854 kb on + strand, within GFF3692 at 582.855 kb on - strand, within GFF3692 at 583.023 kb on - strand at 583.028 kb on + strand at 583.034 kb on + strand at 583.076 kb on + strand at 583.076 kb on + strand at 583.077 kb on - strand at 583.097 kb on + strand at 583.097 kb on + strand at 583.097 kb on + strand at 583.098 kb on - strand at 583.098 kb on - strand at 583.109 kb on + strand at 583.261 kb on - strand at 583.705 kb on - strand, within GFF3693 at 583.972 kb on - strand, within GFF3693
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 580,101 - -0.5 580,101 - -1.1 580,130 - GFF3690 0.12 -3.6 580,476 - GFF3690 0.65 -2.5 580,490 + GFF3690 0.67 -0.5 581,432 + GFF3692 0.19 -2.4 581,433 - GFF3692 0.19 -0.6 581,666 + GFF3692 0.30 -2.1 582,203 + GFF3692 0.56 -2.2 582,204 - GFF3692 0.56 -2.5 582,741 - GFF3692 0.83 -2.2 582,774 - GFF3692 0.84 -3.0 582,779 + GFF3692 0.84 -1.3 582,780 - GFF3692 0.84 -1.3 582,780 - GFF3692 0.84 -1.8 582,854 + GFF3692 0.88 -2.1 582,855 - GFF3692 0.88 -0.5 583,023 - -0.3 583,028 + -1.5 583,034 + +0.8 583,076 + -1.0 583,076 + -3.1 583,077 - -2.2 583,097 + -0.6 583,097 + -0.5 583,097 + -0.4 583,098 - -1.0 583,098 - -2.4 583,109 + -0.8 583,261 - -2.6 583,705 - GFF3693 0.40 -1.9 583,972 - GFF3693 0.58 -0.1
Or see this region's nucleotide sequence