Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3677 and GFF3678 overlap by 1 nucleotides GFF3678 and GFF3679 are separated by 20 nucleotides GFF3679 and GFF3680 are separated by 55 nucleotides
GFF3677 - Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8), at 566,902 to 569,031
GFF3677
GFF3678 - Quinone oxidoreductase (EC 1.6.5.5), at 569,031 to 570,020
GFF3678
GFF3679 - Triosephosphate isomerase (EC 5.3.1.1), at 570,041 to 570,787
GFF3679
GFF3680 - Preprotein translocase subunit SecG (TC 3.A.5.1.1), at 570,843 to 571,226
GFF3680
Position (kb) 569
570
571 Strain fitness (log2 ratio) -1
0
1 at 569.610 kb on + strand, within GFF3678 at 569.610 kb on + strand, within GFF3678 at 569.610 kb on + strand, within GFF3678 at 569.610 kb on + strand, within GFF3678 at 569.610 kb on + strand, within GFF3678 at 569.611 kb on - strand, within GFF3678 at 569.611 kb on - strand, within GFF3678 at 569.611 kb on - strand, within GFF3678 at 569.611 kb on - strand, within GFF3678 at 569.697 kb on + strand, within GFF3678 at 569.697 kb on + strand, within GFF3678 at 569.697 kb on + strand, within GFF3678 at 569.697 kb on + strand, within GFF3678 at 569.698 kb on - strand, within GFF3678 at 569.698 kb on - strand, within GFF3678 at 569.698 kb on - strand, within GFF3678 at 569.698 kb on - strand, within GFF3678 at 569.698 kb on - strand, within GFF3678 at 570.827 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 569,610 + GFF3678 0.58 -0.8 569,610 + GFF3678 0.58 -0.7 569,610 + GFF3678 0.58 -0.7 569,610 + GFF3678 0.58 -1.5 569,610 + GFF3678 0.58 +0.1 569,611 - GFF3678 0.59 -1.6 569,611 - GFF3678 0.59 +0.0 569,611 - GFF3678 0.59 -0.5 569,611 - GFF3678 0.59 +0.1 569,697 + GFF3678 0.67 -0.4 569,697 + GFF3678 0.67 -0.5 569,697 + GFF3678 0.67 -0.3 569,697 + GFF3678 0.67 -0.2 569,698 - GFF3678 0.67 -0.6 569,698 - GFF3678 0.67 -0.2 569,698 - GFF3678 0.67 -0.5 569,698 - GFF3678 0.67 -0.9 569,698 - GFF3678 0.67 -0.1 570,827 + -0.1
Or see this region's nucleotide sequence