Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3621 and GFF3622 are separated by 123 nucleotides GFF3622 and GFF3623 are separated by 5 nucleotides GFF3623 and GFF3624 are separated by 34 nucleotides
GFF3621 - Transcriptional regulator, LysR family, at 508,862 to 509,761
GFF3621
GFF3622 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 509,885 to 510,274
GFF3622
GFF3623 - Endoribonuclease L-PSP, at 510,280 to 510,753
GFF3623
GFF3624 - Tricarboxylate transport protein TctC, at 510,788 to 511,759
GFF3624
Position (kb) 509
510
511 Strain fitness (log2 ratio) -1
0
1 at 509.457 kb on + strand, within GFF3621 at 509.458 kb on - strand, within GFF3621 at 509.458 kb on - strand, within GFF3621 at 509.568 kb on + strand, within GFF3621 at 509.569 kb on - strand, within GFF3621 at 509.734 kb on - strand at 509.903 kb on + strand at 509.903 kb on + strand at 509.903 kb on + strand at 509.903 kb on + strand at 509.904 kb on - strand at 509.904 kb on - strand at 509.990 kb on + strand, within GFF3622 at 509.991 kb on - strand, within GFF3622 at 510.158 kb on + strand, within GFF3622 at 510.316 kb on - strand at 510.475 kb on + strand, within GFF3623 at 510.475 kb on + strand, within GFF3623 at 510.575 kb on - strand, within GFF3623 at 510.610 kb on + strand, within GFF3623 at 510.706 kb on + strand at 510.706 kb on + strand at 510.707 kb on - strand at 510.707 kb on - strand at 511.046 kb on + strand, within GFF3624 at 511.112 kb on + strand, within GFF3624 at 511.112 kb on + strand, within GFF3624 at 511.113 kb on - strand, within GFF3624 at 511.250 kb on + strand, within GFF3624 at 511.251 kb on - strand, within GFF3624
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 509,457 + GFF3621 0.66 +0.1 509,458 - GFF3621 0.66 +0.5 509,458 - GFF3621 0.66 -1.6 509,568 + GFF3621 0.78 -0.3 509,569 - GFF3621 0.79 +0.1 509,734 - +1.5 509,903 + +0.9 509,903 + +0.9 509,903 + -0.1 509,903 + -0.1 509,904 - -0.5 509,904 - +0.4 509,990 + GFF3622 0.27 -0.7 509,991 - GFF3622 0.27 -0.1 510,158 + GFF3622 0.70 -1.1 510,316 - +0.8 510,475 + GFF3623 0.41 -1.1 510,475 + GFF3623 0.41 -0.4 510,575 - GFF3623 0.62 +0.2 510,610 + GFF3623 0.70 -0.3 510,706 + -0.2 510,706 + +0.5 510,707 - -0.3 510,707 - -0.4 511,046 + GFF3624 0.27 +0.2 511,112 + GFF3624 0.33 -0.6 511,112 + GFF3624 0.33 -0.3 511,113 - GFF3624 0.33 +1.5 511,250 + GFF3624 0.48 +0.1 511,251 - GFF3624 0.48 -0.3
Or see this region's nucleotide sequence