Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3609 and GFF3610 are separated by 91 nucleotides GFF3610 and GFF3611 are separated by 14 nucleotides GFF3611 and GFF3612 are separated by 246 nucleotides
GFF3609 - Transcriptional regulator, LysR family, at 496,220 to 497,152
GFF3609
GFF3610 - 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) decarboxylase, at 497,244 to 497,798
GFF3610
GFF3611 - putative exported protein, at 497,813 to 498,793
GFF3611
GFF3612 - Outer membrane autotransporter barrel, at 499,040 to 500,776
GFF3612
Position (kb) 497
498
499 Strain fitness (log2 ratio) -1
0
1 at 497.118 kb on + strand at 497.180 kb on + strand at 497.240 kb on + strand at 497.240 kb on + strand at 497.240 kb on + strand at 497.241 kb on - strand at 497.455 kb on - strand, within GFF3610 at 497.596 kb on - strand, within GFF3610 at 497.596 kb on - strand, within GFF3610 at 498.080 kb on + strand, within GFF3611 at 498.080 kb on + strand, within GFF3611 at 498.146 kb on + strand, within GFF3611 at 498.285 kb on - strand, within GFF3611 at 498.371 kb on + strand, within GFF3611 at 498.372 kb on - strand, within GFF3611 at 498.841 kb on + strand at 498.842 kb on - strand at 498.842 kb on - strand at 498.842 kb on - strand at 498.914 kb on + strand at 498.915 kb on - strand at 498.983 kb on + strand at 498.983 kb on + strand at 498.995 kb on + strand at 498.995 kb on + strand at 498.995 kb on + strand at 498.995 kb on + strand at 498.995 kb on + strand at 498.996 kb on - strand at 499.078 kb on - strand at 499.263 kb on - strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.352 kb on + strand, within GFF3612 at 499.353 kb on - strand, within GFF3612 at 499.353 kb on - strand, within GFF3612 at 499.353 kb on - strand, within GFF3612 at 499.388 kb on + strand, within GFF3612 at 499.389 kb on - strand, within GFF3612 at 499.481 kb on + strand, within GFF3612 at 499.481 kb on + strand, within GFF3612 at 499.481 kb on + strand, within GFF3612 at 499.482 kb on - strand, within GFF3612 at 499.482 kb on - strand, within GFF3612 at 499.482 kb on - strand, within GFF3612 at 499.482 kb on - strand, within GFF3612 at 499.482 kb on - strand, within GFF3612 at 499.577 kb on - strand, within GFF3612 at 499.577 kb on - strand, within GFF3612 at 499.577 kb on - strand, within GFF3612
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 497,118 + +0.1 497,180 + -0.2 497,240 + +0.3 497,240 + -0.2 497,240 + +0.1 497,241 - +1.5 497,455 - GFF3610 0.38 -0.0 497,596 - GFF3610 0.63 +0.4 497,596 - GFF3610 0.63 +0.1 498,080 + GFF3611 0.27 -0.7 498,080 + GFF3611 0.27 +0.5 498,146 + GFF3611 0.34 -0.6 498,285 - GFF3611 0.48 -0.1 498,371 + GFF3611 0.57 -0.2 498,372 - GFF3611 0.57 -0.9 498,841 + -0.0 498,842 - +0.2 498,842 - +0.5 498,842 - -0.2 498,914 + +0.2 498,915 - -0.0 498,983 + +0.4 498,983 + +0.0 498,995 + -0.2 498,995 + +0.7 498,995 + -0.0 498,995 + +0.5 498,995 + -0.4 498,996 - -0.0 499,078 - +0.3 499,263 - GFF3612 0.13 -0.3 499,352 + GFF3612 0.18 +0.2 499,352 + GFF3612 0.18 -0.0 499,352 + GFF3612 0.18 -0.3 499,352 + GFF3612 0.18 +0.3 499,352 + GFF3612 0.18 +0.3 499,352 + GFF3612 0.18 -0.2 499,352 + GFF3612 0.18 -0.3 499,353 - GFF3612 0.18 +0.5 499,353 - GFF3612 0.18 +1.3 499,353 - GFF3612 0.18 +0.7 499,388 + GFF3612 0.20 -0.1 499,389 - GFF3612 0.20 +0.1 499,481 + GFF3612 0.25 +0.1 499,481 + GFF3612 0.25 -0.1 499,481 + GFF3612 0.25 -0.4 499,482 - GFF3612 0.25 +0.9 499,482 - GFF3612 0.25 +0.1 499,482 - GFF3612 0.25 +0.0 499,482 - GFF3612 0.25 +1.0 499,482 - GFF3612 0.25 +0.2 499,577 - GFF3612 0.31 +0.6 499,577 - GFF3612 0.31 -0.8 499,577 - GFF3612 0.31 +0.5
Or see this region's nucleotide sequence