Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3591 and GFF3592 are separated by 12 nucleotides GFF3592 and GFF3593 overlap by 4 nucleotides GFF3593 and GFF3594 are separated by 5 nucleotides GFF3594 and GFF3595 are separated by 35 nucleotides GFF3595 and GFF3596 are separated by 124 nucleotides
GFF3591 - Histidine utilization repressor, at 479,247 to 479,963
GFF3591
GFF3592 - Transcriptional regulator protein, at 479,976 to 480,776
GFF3592
GFF3593 - Autolysin sensor kinase (EC 2.7.3.-), at 480,773 to 481,855
GFF3593
GFF3594 - hypothetical protein, at 481,861 to 482,151
GFF3594
GFF3595 - membrane protein, putative, at 482,187 to 482,618
GFF3595
GFF3596 - Sensory box histidine kinase, at 482,743 to 484,617
GFF3596
Position (kb) 480
481
482 Strain fitness (log2 ratio) -2
-1
0
1 at 480.001 kb on + strand at 480.002 kb on - strand at 480.211 kb on + strand, within GFF3592 at 480.211 kb on + strand, within GFF3592 at 480.211 kb on + strand, within GFF3592 at 480.212 kb on - strand, within GFF3592 at 480.212 kb on - strand, within GFF3592 at 480.212 kb on - strand, within GFF3592 at 480.212 kb on - strand, within GFF3592 at 480.212 kb on - strand, within GFF3592 at 480.463 kb on + strand, within GFF3592 at 480.464 kb on - strand, within GFF3592 at 480.464 kb on - strand, within GFF3592 at 480.500 kb on - strand, within GFF3592 at 481.113 kb on + strand, within GFF3593 at 481.156 kb on - strand, within GFF3593 at 481.440 kb on + strand, within GFF3593 at 481.441 kb on - strand, within GFF3593 at 481.441 kb on - strand, within GFF3593 at 481.441 kb on - strand, within GFF3593 at 481.443 kb on + strand, within GFF3593 at 481.444 kb on - strand, within GFF3593 at 481.570 kb on - strand, within GFF3593 at 481.570 kb on - strand, within GFF3593 at 481.570 kb on - strand, within GFF3593 at 481.580 kb on + strand, within GFF3593 at 481.756 kb on + strand at 481.756 kb on + strand at 481.994 kb on + strand, within GFF3594 at 481.994 kb on + strand, within GFF3594 at 482.075 kb on + strand, within GFF3594 at 482.075 kb on + strand, within GFF3594 at 482.075 kb on + strand, within GFF3594 at 482.076 kb on - strand, within GFF3594 at 482.230 kb on + strand at 482.281 kb on + strand, within GFF3595 at 482.282 kb on - strand, within GFF3595 at 482.428 kb on + strand, within GFF3595 at 482.474 kb on - strand, within GFF3595
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 480,001 + +0.5 480,002 - +0.8 480,211 + GFF3592 0.29 -0.4 480,211 + GFF3592 0.29 +0.3 480,211 + GFF3592 0.29 +0.4 480,212 - GFF3592 0.29 +0.1 480,212 - GFF3592 0.29 -0.1 480,212 - GFF3592 0.29 -0.2 480,212 - GFF3592 0.29 +0.3 480,212 - GFF3592 0.29 +0.3 480,463 + GFF3592 0.61 -0.1 480,464 - GFF3592 0.61 -0.8 480,464 - GFF3592 0.61 -0.2 480,500 - GFF3592 0.65 -0.1 481,113 + GFF3593 0.31 +1.0 481,156 - GFF3593 0.35 +0.7 481,440 + GFF3593 0.62 +0.2 481,441 - GFF3593 0.62 +0.5 481,441 - GFF3593 0.62 +0.1 481,441 - GFF3593 0.62 -0.3 481,443 + GFF3593 0.62 +0.4 481,444 - GFF3593 0.62 +0.5 481,570 - GFF3593 0.74 -0.2 481,570 - GFF3593 0.74 +0.3 481,570 - GFF3593 0.74 +0.2 481,580 + GFF3593 0.75 -0.1 481,756 + -0.1 481,756 + +1.2 481,994 + GFF3594 0.46 -0.6 481,994 + GFF3594 0.46 +0.2 482,075 + GFF3594 0.74 -0.5 482,075 + GFF3594 0.74 -0.2 482,075 + GFF3594 0.74 +0.8 482,076 - GFF3594 0.74 -2.0 482,230 + +0.9 482,281 + GFF3595 0.22 +0.1 482,282 - GFF3595 0.22 +0.5 482,428 + GFF3595 0.56 +0.1 482,474 - GFF3595 0.66 +0.1
Or see this region's nucleotide sequence