Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3570 and GFF3571 are separated by 47 nucleotides GFF3571 and GFF3572 are separated by 109 nucleotides GFF3572 and GFF3573 are separated by 24 nucleotides GFF3573 and GFF3574 are separated by 43 nucleotides
GFF3570 - Thiol:disulfide interchange protein DsbG precursor, at 458,972 to 459,616
GFF3570
GFF3571 - Probable transmembrane protein, at 459,664 to 460,134
GFF3571
GFF3572 - protein of unknown function DUF1332, at 460,244 to 460,735
GFF3572
GFF3573 - SAM-dependent methyltransferase (EC 2.1.1.-), at 460,760 to 461,374
GFF3573
GFF3574 - hypothetical protein, at 461,418 to 462,638
GFF3574
Position (kb) 460
461 Strain fitness (log2 ratio) -2
-1
0
1
2 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.369 kb on + strand, within GFF3570 at 459.370 kb on - strand, within GFF3570 at 459.370 kb on - strand, within GFF3570 at 459.720 kb on - strand, within GFF3571 at 459.720 kb on - strand, within GFF3571 at 459.764 kb on + strand, within GFF3571 at 459.765 kb on - strand, within GFF3571 at 459.765 kb on - strand, within GFF3571 at 459.797 kb on + strand, within GFF3571 at 459.797 kb on + strand, within GFF3571 at 459.798 kb on - strand, within GFF3571 at 459.798 kb on - strand, within GFF3571 at 459.827 kb on + strand, within GFF3571 at 459.863 kb on + strand, within GFF3571 at 459.863 kb on + strand, within GFF3571 at 459.864 kb on - strand, within GFF3571 at 459.864 kb on - strand, within GFF3571 at 459.864 kb on - strand, within GFF3571 at 459.865 kb on + strand, within GFF3571 at 459.866 kb on + strand, within GFF3571 at 459.866 kb on + strand, within GFF3571 at 459.867 kb on - strand, within GFF3571 at 459.867 kb on - strand, within GFF3571 at 459.867 kb on - strand, within GFF3571 at 459.869 kb on + strand, within GFF3571 at 459.869 kb on + strand, within GFF3571 at 459.870 kb on - strand, within GFF3571 at 459.870 kb on - strand, within GFF3571 at 459.870 kb on - strand, within GFF3571 at 459.879 kb on - strand, within GFF3571 at 459.879 kb on - strand, within GFF3571 at 459.984 kb on - strand, within GFF3571 at 460.302 kb on + strand, within GFF3572 at 460.302 kb on + strand, within GFF3572 at 460.302 kb on + strand, within GFF3572 at 460.302 kb on + strand, within GFF3572 at 460.302 kb on + strand, within GFF3572 at 460.302 kb on + strand, within GFF3572 at 460.303 kb on - strand, within GFF3572 at 460.474 kb on - strand, within GFF3572 at 460.953 kb on + strand, within GFF3573 at 460.962 kb on + strand, within GFF3573 at 460.963 kb on - strand, within GFF3573 at 460.963 kb on - strand, within GFF3573 at 461.061 kb on + strand, within GFF3573 at 461.061 kb on + strand, within GFF3573 at 461.061 kb on + strand, within GFF3573 at 461.061 kb on + strand, within GFF3573 at 461.061 kb on + strand, within GFF3573 at 461.062 kb on - strand, within GFF3573 at 461.062 kb on - strand, within GFF3573 at 461.062 kb on - strand, within GFF3573 at 461.062 kb on - strand, within GFF3573 at 461.062 kb on - strand, within GFF3573 at 461.062 kb on - strand, within GFF3573
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 459,369 + GFF3570 0.62 -0.1 459,369 + GFF3570 0.62 +1.2 459,369 + GFF3570 0.62 -0.2 459,369 + GFF3570 0.62 +0.1 459,369 + GFF3570 0.62 -1.4 459,369 + GFF3570 0.62 -0.2 459,369 + GFF3570 0.62 +0.3 459,370 - GFF3570 0.62 +0.4 459,370 - GFF3570 0.62 -0.7 459,720 - GFF3571 0.12 -0.5 459,720 - GFF3571 0.12 +0.2 459,764 + GFF3571 0.21 -0.7 459,765 - GFF3571 0.21 +0.3 459,765 - GFF3571 0.21 +0.5 459,797 + GFF3571 0.28 -0.5 459,797 + GFF3571 0.28 +0.6 459,798 - GFF3571 0.28 +0.5 459,798 - GFF3571 0.28 +1.5 459,827 + GFF3571 0.35 -0.0 459,863 + GFF3571 0.42 +0.5 459,863 + GFF3571 0.42 +0.2 459,864 - GFF3571 0.42 -0.0 459,864 - GFF3571 0.42 +0.1 459,864 - GFF3571 0.42 -0.5 459,865 + GFF3571 0.43 -0.1 459,866 + GFF3571 0.43 -0.5 459,866 + GFF3571 0.43 +1.9 459,867 - GFF3571 0.43 +0.3 459,867 - GFF3571 0.43 +0.3 459,867 - GFF3571 0.43 -0.2 459,869 + GFF3571 0.44 -0.2 459,869 + GFF3571 0.44 -0.1 459,870 - GFF3571 0.44 +0.4 459,870 - GFF3571 0.44 +0.0 459,870 - GFF3571 0.44 -0.4 459,879 - GFF3571 0.46 +0.1 459,879 - GFF3571 0.46 -0.1 459,984 - GFF3571 0.68 -0.7 460,302 + GFF3572 0.12 +1.2 460,302 + GFF3572 0.12 +0.4 460,302 + GFF3572 0.12 -2.6 460,302 + GFF3572 0.12 +0.4 460,302 + GFF3572 0.12 +0.2 460,302 + GFF3572 0.12 -0.0 460,303 - GFF3572 0.12 +0.7 460,474 - GFF3572 0.47 +0.5 460,953 + GFF3573 0.31 -0.2 460,962 + GFF3573 0.33 +0.3 460,963 - GFF3573 0.33 +0.1 460,963 - GFF3573 0.33 +0.7 461,061 + GFF3573 0.49 +0.2 461,061 + GFF3573 0.49 -0.1 461,061 + GFF3573 0.49 -0.5 461,061 + GFF3573 0.49 +0.8 461,061 + GFF3573 0.49 +0.5 461,062 - GFF3573 0.49 -0.9 461,062 - GFF3573 0.49 +0.1 461,062 - GFF3573 0.49 -0.1 461,062 - GFF3573 0.49 -0.3 461,062 - GFF3573 0.49 -0.3 461,062 - GFF3573 0.49 +0.2
Or see this region's nucleotide sequence