Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3489 and GFF3490 are separated by 312 nucleotides GFF3490 and GFF3491 are separated by 58 nucleotides GFF3491 and GFF3492 are separated by 728 nucleotides
GFF3489 - Probable lipoprotein, at 368,734 to 369,087
GFF3489
GFF3490 - Predicted transcriptional regulators, at 369,400 to 369,690
GFF3490
GFF3491 - y4eB gene in pNGR234a homolog, at 369,749 to 370,060
GFF3491
GFF3492 - hypothetical protein, at 370,789 to 371,364
GFF3492
Position (kb) 369
370
371 Strain fitness (log2 ratio) -1
0
1 at 368.774 kb on + strand, within GFF3489 at 368.825 kb on - strand, within GFF3489 at 369.091 kb on - strand at 369.091 kb on - strand at 369.091 kb on - strand at 369.091 kb on - strand at 369.091 kb on - strand at 369.091 kb on - strand at 369.269 kb on - strand at 369.287 kb on + strand at 369.287 kb on + strand at 369.288 kb on - strand at 369.292 kb on - strand at 369.292 kb on - strand at 369.292 kb on - strand at 369.819 kb on + strand, within GFF3491 at 369.820 kb on - strand, within GFF3491 at 369.820 kb on - strand, within GFF3491 at 369.858 kb on + strand, within GFF3491 at 369.865 kb on - strand, within GFF3491 at 369.865 kb on - strand, within GFF3491 at 369.912 kb on + strand, within GFF3491 at 369.912 kb on + strand, within GFF3491 at 370.447 kb on - strand at 370.589 kb on + strand at 370.589 kb on + strand at 370.589 kb on + strand at 370.589 kb on + strand at 370.728 kb on - strand at 370.728 kb on - strand at 370.804 kb on - strand at 370.804 kb on - strand at 370.804 kb on - strand at 370.804 kb on - strand at 370.804 kb on - strand at 370.817 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 368,774 + GFF3489 0.11 -0.7 368,825 - GFF3489 0.26 -0.1 369,091 - -0.4 369,091 - +0.3 369,091 - +0.6 369,091 - -0.9 369,091 - +0.6 369,091 - +1.6 369,269 - +0.3 369,287 + +0.2 369,287 + -0.2 369,288 - +0.5 369,292 - +0.2 369,292 - -0.5 369,292 - +0.7 369,819 + GFF3491 0.22 -0.7 369,820 - GFF3491 0.23 +0.0 369,820 - GFF3491 0.23 -0.3 369,858 + GFF3491 0.35 -0.1 369,865 - GFF3491 0.37 -1.1 369,865 - GFF3491 0.37 -0.0 369,912 + GFF3491 0.52 -0.2 369,912 + GFF3491 0.52 -0.4 370,447 - -0.8 370,589 + +0.5 370,589 + -0.3 370,589 + +0.7 370,589 + +0.2 370,728 - +0.4 370,728 - -0.3 370,804 - +0.5 370,804 - -0.2 370,804 - +0.3 370,804 - -0.5 370,804 - -0.0 370,817 + +0.6
Or see this region's nucleotide sequence