Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3404 and GFF3405 are separated by 2 nucleotides GFF3405 and GFF3406 are separated by 31 nucleotides GFF3406 and GFF3407 are separated by 16 nucleotides GFF3407 and GFF3408 overlap by 4 nucleotides
GFF3404 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 289,504 to 290,655
GFF3404
GFF3405 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 290,658 to 291,488
GFF3405
GFF3406 - MaoC family protein, at 291,520 to 291,927
GFF3406
GFF3407 - Acyl dehydratase, at 291,944 to 292,384
GFF3407
GFF3408 - Acetyl-CoA acetyltransferase, at 292,381 to 293,571
GFF3408
Position (kb) 290
291
292 Strain fitness (log2 ratio) -1
0
1 at 289.694 kb on + strand, within GFF3404 at 289.694 kb on + strand, within GFF3404 at 289.853 kb on + strand, within GFF3404 at 289.853 kb on + strand, within GFF3404 at 289.854 kb on - strand, within GFF3404 at 289.923 kb on - strand, within GFF3404 at 290.358 kb on - strand, within GFF3404 at 290.435 kb on + strand, within GFF3404 at 290.462 kb on + strand, within GFF3404 at 290.462 kb on + strand, within GFF3404 at 290.463 kb on - strand, within GFF3404 at 290.708 kb on - strand at 290.735 kb on - strand at 290.735 kb on - strand at 290.735 kb on - strand at 291.209 kb on - strand, within GFF3405 at 292.400 kb on + strand at 292.400 kb on + strand at 292.400 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 289,694 + GFF3404 0.16 -0.1 289,694 + GFF3404 0.16 -0.1 289,853 + GFF3404 0.30 +0.2 289,853 + GFF3404 0.30 -0.1 289,854 - GFF3404 0.30 +1.0 289,923 - GFF3404 0.36 -0.2 290,358 - GFF3404 0.74 +0.5 290,435 + GFF3404 0.81 -0.2 290,462 + GFF3404 0.83 -0.8 290,462 + GFF3404 0.83 -0.1 290,463 - GFF3404 0.83 -0.3 290,708 - -0.1 290,735 - +0.5 290,735 - +0.0 290,735 - -0.5 291,209 - GFF3405 0.66 -0.9 292,400 + +0.0 292,400 + +0.9 292,400 + -1.7
Or see this region's nucleotide sequence