Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF33

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
29,353	-				+0.3
29,463	+		GFF32	0.23	-0.1
29,463	+		GFF32	0.23	-2.0
30,155	+				+0.5
30,156	-		GFF33	0.10	+0.2
30,326	+		GFF33	0.27	-0.3
30,332	+		GFF33	0.27	-0.1
30,333	-		GFF33	0.27	+1.0
30,428	+		GFF33	0.37	-0.1
30,429	-		GFF33	0.37	+0.1
30,570	-		GFF33	0.51	+0.2
30,570	-		GFF33	0.51	+0.3
30,893	+		GFF33	0.83	+0.5
30,893	+		GFF33	0.83	+0.5
31,720	+		GFF34	0.68	+0.3
31,720	+		GFF34	0.68	+0.2
31,721	-		GFF34	0.69	-0.0
31,721	-		GFF34	0.69	-0.3
31,721	-		GFF34	0.69	+0.1
31,753	+		GFF34	0.72	+0.4
31,954	+				-1.2
31,954	+				+0.4
31,954	+				+0.1
31,954	+				+0.4
31,954	+				-1.3
31,954	+				+0.3
31,955	-				+0.1
31,955	-				+1.7
31,955	-				+0.1
32,062	-				-0.2