Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3014

Experiment: Ying_AminoAcid20 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3013 and GFF3014 are separated by 103 nucleotidesGFF3014 and GFF3015 are separated by 6 nucleotides GFF3013 - Phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); Outer membrane phospholipase A, at 89,934 to 91,034 GFF3013 GFF3014 - hypothetical protein, at 91,138 to 92,478 GFF3014 GFF3015 - Na(+)/H(+) antiporter, at 92,485 to 93,699 GFF3015 Position (kb) 91 92 93Strain fitness (log2 ratio) -1 0 1at 90.294 kb on + strand, within GFF3013at 90.294 kb on + strand, within GFF3013at 90.294 kb on + strand, within GFF3013at 90.294 kb on + strand, within GFF3013at 90.294 kb on + strand, within GFF3013at 90.294 kb on + strand, within GFF3013at 90.294 kb on + strand, within GFF3013at 90.294 kb on + strand, within GFF3013at 90.295 kb on - strand, within GFF3013at 90.295 kb on - strand, within GFF3013at 90.295 kb on - strand, within GFF3013at 90.492 kb on + strand, within GFF3013at 90.493 kb on - strand, within GFF3013at 90.532 kb on - strand, within GFF3013at 90.549 kb on + strand, within GFF3013at 90.549 kb on + strand, within GFF3013at 90.549 kb on + strand, within GFF3013at 90.549 kb on + strand, within GFF3013at 90.549 kb on + strand, within GFF3013at 90.550 kb on - strand, within GFF3013at 90.550 kb on - strand, within GFF3013at 90.550 kb on - strand, within GFF3013at 90.550 kb on - strand, within GFF3013at 90.550 kb on - strand, within GFF3013at 90.550 kb on - strand, within GFF3013at 90.550 kb on - strand, within GFF3013at 90.550 kb on - strand, within GFF3013at 90.574 kb on - strand, within GFF3013at 90.574 kb on - strand, within GFF3013at 90.606 kb on + strand, within GFF3013at 90.607 kb on - strand, within GFF3013at 90.679 kb on - strand, within GFF3013at 90.679 kb on - strand, within GFF3013at 90.679 kb on - strand, within GFF3013at 90.783 kb on + strand, within GFF3013at 90.900 kb on + strand, within GFF3013at 90.901 kb on - strand, within GFF3013at 90.939 kb on + strandat 90.939 kb on + strandat 90.939 kb on + strandat 90.939 kb on + strandat 90.939 kb on + strandat 90.940 kb on - strandat 90.940 kb on - strandat 90.981 kb on + strandat 90.981 kb on + strandat 90.981 kb on + strandat 90.982 kb on - strandat 90.982 kb on - strandat 91.222 kb on + strandat 91.223 kb on - strandat 91.444 kb on + strand, within GFF3014at 91.445 kb on - strand, within GFF3014at 91.877 kb on - strand, within GFF3014at 91.877 kb on - strand, within GFF3014at 92.065 kb on + strand, within GFF3014at 92.065 kb on + strand, within GFF3014at 92.066 kb on - strand, within GFF3014at 92.066 kb on - strand, within GFF3014at 92.066 kb on - strand, within GFF3014at 92.066 kb on - strand, within GFF3014at 92.066 kb on - strand, within GFF3014at 92.066 kb on - strand, within GFF3014at 92.066 kb on - strand, within GFF3014at 92.066 kb on - strand, within GFF3014at 92.066 kb on - strand, within GFF3014at 92.125 kb on + strand, within GFF3014at 92.125 kb on + strand, within GFF3014at 92.125 kb on + strand, within GFF3014at 92.125 kb on + strand, within GFF3014at 92.126 kb on - strand, within GFF3014at 92.126 kb on - strand, within GFF3014at 92.126 kb on - strand, within GFF3014at 92.126 kb on - strand, within GFF3014at 92.227 kb on + strand, within GFF3014at 92.227 kb on + strand, within GFF3014at 92.227 kb on + strand, within GFF3014at 92.228 kb on - strand, within GFF3014at 92.773 kb on + strand, within GFF3015at 92.773 kb on + strand, within GFF3015at 92.773 kb on + strand, within GFF3015at 92.773 kb on - strand, within GFF3015at 92.774 kb on - strand, within GFF3015at 92.774 kb on - strand, within GFF3015at 92.872 kb on + strand, within GFF3015at 92.873 kb on - strand, within GFF3015at 92.957 kb on + strand, within GFF3015at 92.957 kb on + strand, within GFF3015at 92.957 kb on + strand, within GFF3015at 92.958 kb on - strand, within GFF3015at 92.958 kb on - strand, within GFF3015at 92.958 kb on - strand, within GFF3015at 92.958 kb on - strand, within GFF3015at 92.958 kb on - strand, within GFF3015at 92.958 kb on - strand, within GFF3015at 92.958 kb on - strand, within GFF3015at 92.958 kb on - strand, within GFF3015at 92.958 kb on - strand, within GFF3015at 92.958 kb on - strand, within GFF3015at 92.958 kb on - strand, within GFF3015at 93.270 kb on + strand, within GFF3015

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1
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90,294 + GFF3013 0.33 -0.2
90,294 + GFF3013 0.33 -0.8
90,294 + GFF3013 0.33 -0.6
90,294 + GFF3013 0.33 -0.5
90,294 + GFF3013 0.33 -0.0
90,294 + GFF3013 0.33 -0.2
90,294 + GFF3013 0.33 -0.6
90,294 + GFF3013 0.33 -0.2
90,295 - GFF3013 0.33 +0.5
90,295 - GFF3013 0.33 -0.0
90,295 - GFF3013 0.33 -0.0
90,492 + GFF3013 0.51 +0.1
90,493 - GFF3013 0.51 -0.9
90,532 - GFF3013 0.54 +0.8
90,549 + GFF3013 0.56 -1.0
90,549 + GFF3013 0.56 +0.1
90,549 + GFF3013 0.56 +0.3
90,549 + GFF3013 0.56 +0.5
90,549 + GFF3013 0.56 +0.1
90,550 - GFF3013 0.56 -0.0
90,550 - GFF3013 0.56 +0.6
90,550 - GFF3013 0.56 -0.2
90,550 - GFF3013 0.56 -0.3
90,550 - GFF3013 0.56 +0.2
90,550 - GFF3013 0.56 -0.3
90,550 - GFF3013 0.56 -0.1
90,550 - GFF3013 0.56 +0.1
90,574 - GFF3013 0.58 +0.1
90,574 - GFF3013 0.58 -1.3
90,606 + GFF3013 0.61 +0.4
90,607 - GFF3013 0.61 -0.2
90,679 - GFF3013 0.68 -0.1
90,679 - GFF3013 0.68 -0.5
90,679 - GFF3013 0.68 -0.3
90,783 + GFF3013 0.77 -0.8
90,900 + GFF3013 0.88 +1.3
90,901 - GFF3013 0.88 -0.2
90,939 + +1.0
90,939 + +1.5
90,939 + -0.0
90,939 + -0.0
90,939 + -0.1
90,940 - -0.2
90,940 - -0.2
90,981 + +1.2
90,981 + +0.1
90,981 + +0.9
90,982 - +0.3
90,982 - -0.3
91,222 + -0.3
91,223 - -0.8
91,444 + GFF3014 0.23 -0.2
91,445 - GFF3014 0.23 -0.3
91,877 - GFF3014 0.55 -0.5
91,877 - GFF3014 0.55 -0.1
92,065 + GFF3014 0.69 +0.3
92,065 + GFF3014 0.69 +1.2
92,066 - GFF3014 0.69 +0.2
92,066 - GFF3014 0.69 +1.0
92,066 - GFF3014 0.69 +0.4
92,066 - GFF3014 0.69 +0.1
92,066 - GFF3014 0.69 +0.4
92,066 - GFF3014 0.69 +0.1
92,066 - GFF3014 0.69 -0.9
92,066 - GFF3014 0.69 +0.2
92,066 - GFF3014 0.69 -0.8
92,125 + GFF3014 0.74 +0.9
92,125 + GFF3014 0.74 +0.3
92,125 + GFF3014 0.74 +0.0
92,125 + GFF3014 0.74 +0.4
92,126 - GFF3014 0.74 +1.5
92,126 - GFF3014 0.74 -0.3
92,126 - GFF3014 0.74 -0.0
92,126 - GFF3014 0.74 +1.0
92,227 + GFF3014 0.81 -0.2
92,227 + GFF3014 0.81 +0.6
92,227 + GFF3014 0.81 +1.1
92,228 - GFF3014 0.81 -0.8
92,773 + GFF3015 0.24 +0.2
92,773 + GFF3015 0.24 +0.1
92,773 + GFF3015 0.24 -0.2
92,773 - GFF3015 0.24 -0.5
92,774 - GFF3015 0.24 -0.5
92,774 - GFF3015 0.24 +0.5
92,872 + GFF3015 0.32 -0.2
92,873 - GFF3015 0.32 +0.4
92,957 + GFF3015 0.39 -0.1
92,957 + GFF3015 0.39 -0.0
92,957 + GFF3015 0.39 +0.2
92,958 - GFF3015 0.39 +0.3
92,958 - GFF3015 0.39 +1.0
92,958 - GFF3015 0.39 +0.1
92,958 - GFF3015 0.39 +1.2
92,958 - GFF3015 0.39 +0.3
92,958 - GFF3015 0.39 +0.2
92,958 - GFF3015 0.39 -0.1
92,958 - GFF3015 0.39 +0.2
92,958 - GFF3015 0.39 -0.0
92,958 - GFF3015 0.39 +0.2
92,958 - GFF3015 0.39 -1.1
93,270 + GFF3015 0.65 +0.2

Or see this region's nucleotide sequence