Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2964 and GFF2965 overlap by 24 nucleotides GFF2965 and GFF2966 overlap by 4 nucleotides GFF2966 and GFF2967 overlap by 4 nucleotides
GFF2964 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 42,622 to 43,632
GFF2964
GFF2965 - Tricarboxylate transport protein TctC, at 43,609 to 44,571
GFF2965
GFF2966 - putative periplasmic protein kinase ArgK and related GTPases of G3E family, at 44,568 to 45,491
GFF2966
GFF2967 - L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16), at 45,488 to 46,630
GFF2967
Position (kb) 44
45
46 Strain fitness (log2 ratio) -1
0
1 at 44.117 kb on + strand, within GFF2965 at 44.118 kb on - strand, within GFF2965 at 44.118 kb on - strand, within GFF2965 at 45.052 kb on + strand, within GFF2966 at 45.053 kb on - strand, within GFF2966 at 45.184 kb on + strand, within GFF2966 at 45.184 kb on + strand, within GFF2966 at 45.185 kb on - strand, within GFF2966 at 45.185 kb on - strand, within GFF2966 at 45.936 kb on + strand, within GFF2967 at 45.937 kb on - strand, within GFF2967 at 45.937 kb on - strand, within GFF2967 at 45.937 kb on - strand, within GFF2967 at 45.937 kb on - strand, within GFF2967 at 46.003 kb on - strand, within GFF2967 at 46.029 kb on + strand, within GFF2967 at 46.029 kb on + strand, within GFF2967 at 46.029 kb on + strand, within GFF2967 at 46.030 kb on - strand, within GFF2967 at 46.030 kb on - strand, within GFF2967 at 46.030 kb on - strand, within GFF2967 at 46.198 kb on - strand, within GFF2967 at 46.203 kb on + strand, within GFF2967 at 46.293 kb on + strand, within GFF2967 at 46.294 kb on - strand, within GFF2967 at 46.443 kb on + strand, within GFF2967
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 44,117 + GFF2965 0.53 -0.2 44,118 - GFF2965 0.53 -0.4 44,118 - GFF2965 0.53 +0.9 45,052 + GFF2966 0.52 -0.5 45,053 - GFF2966 0.52 +0.2 45,184 + GFF2966 0.67 +0.7 45,184 + GFF2966 0.67 +0.1 45,185 - GFF2966 0.67 -0.0 45,185 - GFF2966 0.67 +1.0 45,936 + GFF2967 0.39 -0.2 45,937 - GFF2967 0.39 -1.1 45,937 - GFF2967 0.39 +0.0 45,937 - GFF2967 0.39 -0.3 45,937 - GFF2967 0.39 +0.2 46,003 - GFF2967 0.45 +0.0 46,029 + GFF2967 0.47 +0.1 46,029 + GFF2967 0.47 -0.9 46,029 + GFF2967 0.47 +0.3 46,030 - GFF2967 0.47 -1.0 46,030 - GFF2967 0.47 +0.4 46,030 - GFF2967 0.47 +0.6 46,198 - GFF2967 0.62 +0.5 46,203 + GFF2967 0.63 +0.2 46,293 + GFF2967 0.70 -0.4 46,294 - GFF2967 0.71 -0.5 46,443 + GFF2967 0.84 -1.2
Or see this region's nucleotide sequence