Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2856 and GFF2857 are separated by 21 nucleotides GFF2857 and GFF2858 are separated by 87 nucleotides GFF2858 and GFF2859 overlap by 4 nucleotides
GFF2856 - FIG01160152: hypothetical protein, at 444,817 to 445,761
GFF2856
GFF2857 - hypothetical protein, at 445,783 to 446,109
GFF2857
GFF2858 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 446,197 to 447,147
GFF2858
GFF2859 - LysR-family transcriptional regulator, at 447,144 to 448,076
GFF2859
Position (kb) 446
447
448 Strain fitness (log2 ratio) -1
0
1 at 445.378 kb on + strand, within GFF2856 at 445.378 kb on + strand, within GFF2856 at 445.379 kb on - strand, within GFF2856 at 445.651 kb on + strand, within GFF2856 at 445.651 kb on + strand, within GFF2856 at 445.651 kb on + strand, within GFF2856 at 445.651 kb on + strand, within GFF2856 at 445.651 kb on + strand, within GFF2856 at 445.882 kb on + strand, within GFF2857 at 445.883 kb on - strand, within GFF2857 at 445.883 kb on - strand, within GFF2857 at 445.883 kb on - strand, within GFF2857 at 445.883 kb on - strand, within GFF2857 at 445.916 kb on - strand, within GFF2857 at 446.389 kb on + strand, within GFF2858 at 446.390 kb on - strand, within GFF2858 at 446.559 kb on + strand, within GFF2858 at 446.767 kb on + strand, within GFF2858 at 446.768 kb on - strand, within GFF2858 at 446.893 kb on + strand, within GFF2858 at 446.893 kb on + strand, within GFF2858 at 446.893 kb on + strand, within GFF2858 at 446.894 kb on - strand, within GFF2858 at 447.031 kb on + strand, within GFF2858 at 447.031 kb on + strand, within GFF2858 at 447.146 kb on - strand at 447.367 kb on + strand, within GFF2859 at 447.367 kb on + strand, within GFF2859 at 447.826 kb on + strand, within GFF2859 at 448.033 kb on + strand at 448.034 kb on - strand at 448.077 kb on - strand at 448.115 kb on - strand at 448.117 kb on + strand at 448.117 kb on + strand at 448.118 kb on - strand at 448.118 kb on - strand at 448.118 kb on - strand at 448.118 kb on - strand at 448.128 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 445,378 + GFF2856 0.59 -0.6 445,378 + GFF2856 0.59 -1.0 445,379 - GFF2856 0.59 -0.1 445,651 + GFF2856 0.88 -0.1 445,651 + GFF2856 0.88 -0.5 445,651 + GFF2856 0.88 -0.0 445,651 + GFF2856 0.88 -0.1 445,651 + GFF2856 0.88 +0.3 445,882 + GFF2857 0.30 -0.2 445,883 - GFF2857 0.31 -0.4 445,883 - GFF2857 0.31 -0.4 445,883 - GFF2857 0.31 -0.3 445,883 - GFF2857 0.31 +0.4 445,916 - GFF2857 0.41 -0.8 446,389 + GFF2858 0.20 +0.1 446,390 - GFF2858 0.20 -0.3 446,559 + GFF2858 0.38 -0.0 446,767 + GFF2858 0.60 +0.2 446,768 - GFF2858 0.60 -1.2 446,893 + GFF2858 0.73 +0.2 446,893 + GFF2858 0.73 -0.1 446,893 + GFF2858 0.73 -0.6 446,894 - GFF2858 0.73 +1.0 447,031 + GFF2858 0.88 -0.6 447,031 + GFF2858 0.88 +0.4 447,146 - +0.7 447,367 + GFF2859 0.24 -0.4 447,367 + GFF2859 0.24 +0.2 447,826 + GFF2859 0.73 +1.2 448,033 + -0.8 448,034 - +0.1 448,077 - -0.3 448,115 - -0.2 448,117 + -0.5 448,117 + +0.5 448,118 - -0.6 448,118 - -0.3 448,118 - -0.1 448,118 - +0.1 448,128 + -0.5
Or see this region's nucleotide sequence