Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2799

Experiment: Ying_AminoAcid20 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2798 and GFF2799 are separated by 188 nucleotidesGFF2799 and GFF2800 are separated by 13 nucleotides GFF2798 - tRNA-guanine transglycosylase (EC 2.4.2.29), at 395,135 to 396,301 GFF2798 GFF2799 - Predicted thiazole transporter ThiU, at 396,490 to 397,758 GFF2799 GFF2800 - L-sorbosone dehydrogenase, at 397,772 to 398,983 GFF2800 Position (kb) 396 397 398Strain fitness (log2 ratio) -2 -1 0 1at 395.559 kb on + strand, within GFF2798at 395.560 kb on - strand, within GFF2798at 395.856 kb on + strand, within GFF2798at 395.857 kb on - strand, within GFF2798at 395.857 kb on - strand, within GFF2798at 396.042 kb on - strand, within GFF2798at 396.195 kb on + strandat 396.195 kb on + strandat 396.196 kb on - strandat 396.196 kb on - strandat 396.196 kb on - strandat 396.335 kb on + strandat 396.336 kb on - strandat 396.336 kb on - strandat 396.337 kb on + strandat 396.356 kb on - strandat 396.511 kb on + strandat 396.511 kb on + strandat 396.511 kb on + strandat 396.512 kb on - strandat 396.512 kb on - strandat 396.512 kb on - strandat 396.512 kb on - strandat 396.517 kb on + strandat 396.517 kb on + strandat 396.518 kb on - strandat 396.518 kb on - strandat 396.520 kb on + strandat 396.520 kb on + strandat 396.520 kb on + strandat 396.520 kb on + strandat 396.520 kb on + strandat 396.520 kb on + strandat 396.520 kb on + strandat 396.521 kb on - strandat 396.521 kb on - strandat 396.521 kb on - strandat 396.521 kb on - strandat 396.521 kb on - strandat 396.526 kb on + strandat 396.526 kb on + strandat 396.526 kb on + strandat 396.526 kb on + strandat 396.526 kb on + strandat 396.527 kb on - strandat 396.527 kb on - strandat 396.754 kb on + strand, within GFF2799at 396.754 kb on + strand, within GFF2799at 396.755 kb on - strand, within GFF2799at 397.045 kb on + strand, within GFF2799at 397.045 kb on + strand, within GFF2799at 397.045 kb on + strand, within GFF2799at 397.045 kb on + strand, within GFF2799at 397.046 kb on - strand, within GFF2799at 397.046 kb on - strand, within GFF2799at 397.186 kb on + strand, within GFF2799at 397.186 kb on + strand, within GFF2799at 397.186 kb on + strand, within GFF2799at 397.186 kb on + strand, within GFF2799at 397.187 kb on - strand, within GFF2799at 397.187 kb on - strand, within GFF2799at 397.198 kb on + strand, within GFF2799at 397.198 kb on + strand, within GFF2799at 397.225 kb on + strand, within GFF2799at 397.226 kb on - strand, within GFF2799at 397.226 kb on - strand, within GFF2799at 397.561 kb on + strand, within GFF2799at 397.562 kb on - strand, within GFF2799at 397.583 kb on - strand, within GFF2799at 397.672 kb on + strandat 397.673 kb on - strandat 397.987 kb on - strand, within GFF2800at 398.175 kb on + strand, within GFF2800at 398.175 kb on + strand, within GFF2800at 398.388 kb on + strand, within GFF2800at 398.388 kb on + strand, within GFF2800at 398.389 kb on - strand, within GFF2800at 398.625 kb on + strand, within GFF2800at 398.626 kb on - strand, within GFF2800

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1
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395,559 + GFF2798 0.36 +0.2
395,560 - GFF2798 0.36 -0.3
395,856 + GFF2798 0.62 +0.7
395,857 - GFF2798 0.62 -0.5
395,857 - GFF2798 0.62 +0.1
396,042 - GFF2798 0.78 -0.1
396,195 + -1.3
396,195 + -2.4
396,196 - +0.4
396,196 - +0.2
396,196 - -1.0
396,335 + -0.7
396,336 - +0.4
396,336 - -0.1
396,337 + +0.6
396,356 - -0.2
396,511 + -0.8
396,511 + -0.3
396,511 + -0.1
396,512 - -0.3
396,512 - +0.5
396,512 - +0.2
396,512 - -0.1
396,517 + +0.2
396,517 + +0.3
396,518 - +1.6
396,518 - -0.1
396,520 + -0.4
396,520 + +0.1
396,520 + +0.2
396,520 + -0.1
396,520 + -0.3
396,520 + +0.3
396,520 + +0.1
396,521 - +0.3
396,521 - +0.6
396,521 - -0.0
396,521 - +0.7
396,521 - -0.1
396,526 + +0.2
396,526 + -0.3
396,526 + -0.1
396,526 + +0.2
396,526 + +0.1
396,527 - -0.6
396,527 - -2.0
396,754 + GFF2799 0.21 +0.6
396,754 + GFF2799 0.21 -0.1
396,755 - GFF2799 0.21 -0.3
397,045 + GFF2799 0.44 -0.8
397,045 + GFF2799 0.44 +0.4
397,045 + GFF2799 0.44 +0.3
397,045 + GFF2799 0.44 +0.5
397,046 - GFF2799 0.44 -0.6
397,046 - GFF2799 0.44 -0.0
397,186 + GFF2799 0.55 +0.3
397,186 + GFF2799 0.55 +0.9
397,186 + GFF2799 0.55 -0.7
397,186 + GFF2799 0.55 -0.0
397,187 - GFF2799 0.55 -0.6
397,187 - GFF2799 0.55 +0.7
397,198 + GFF2799 0.56 -0.3
397,198 + GFF2799 0.56 -1.8
397,225 + GFF2799 0.58 +0.4
397,226 - GFF2799 0.58 +0.5
397,226 - GFF2799 0.58 +0.3
397,561 + GFF2799 0.84 -0.2
397,562 - GFF2799 0.84 -0.2
397,583 - GFF2799 0.86 +0.3
397,672 + +0.3
397,673 - +0.2
397,987 - GFF2800 0.18 -0.8
398,175 + GFF2800 0.33 +0.5
398,175 + GFF2800 0.33 +0.0
398,388 + GFF2800 0.51 -0.1
398,388 + GFF2800 0.51 +0.2
398,389 - GFF2800 0.51 -0.2
398,625 + GFF2800 0.70 +0.1
398,626 - GFF2800 0.70 -0.0

Or see this region's nucleotide sequence