Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2637 and GFF2638 are separated by 76 nucleotides GFF2638 and GFF2639 are separated by 34 nucleotides GFF2639 and GFF2640 overlap by 4 nucleotides GFF2640 and GFF2641 are separated by 44 nucleotides
GFF2637 - FIG01210189: hypothetical protein, at 232,997 to 234,643
GFF2637
GFF2638 - Conserved uncharacterized protein CreA, at 234,720 to 235,193
GFF2638
GFF2639 - hypothetical protein, at 235,228 to 235,707
GFF2639
GFF2640 - Single-stranded DNA-binding protein, at 235,704 to 236,015
GFF2640
GFF2641 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 236,060 to 237,340
GFF2641
Position (kb) 235
236 Strain fitness (log2 ratio) -1
0
1 at 234.443 kb on + strand, within GFF2637 at 234.444 kb on - strand, within GFF2637 at 234.684 kb on + strand at 234.684 kb on + strand at 234.701 kb on + strand at 234.701 kb on + strand at 234.701 kb on + strand at 234.702 kb on - strand at 234.702 kb on - strand at 234.702 kb on - strand at 234.885 kb on + strand, within GFF2638 at 234.885 kb on + strand, within GFF2638 at 234.885 kb on + strand, within GFF2638 at 234.886 kb on - strand, within GFF2638 at 234.886 kb on - strand, within GFF2638 at 234.886 kb on - strand, within GFF2638 at 234.886 kb on - strand, within GFF2638 at 235.098 kb on + strand, within GFF2638 at 235.108 kb on - strand, within GFF2638 at 235.215 kb on + strand at 235.215 kb on + strand at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.339 kb on + strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.340 kb on - strand, within GFF2639 at 235.642 kb on + strand, within GFF2639 at 235.776 kb on + strand, within GFF2640 at 236.439 kb on - strand, within GFF2641 at 236.439 kb on - strand, within GFF2641
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 234,443 + GFF2637 0.88 +0.6 234,444 - GFF2637 0.88 +0.8 234,684 + +0.9 234,684 + +0.5 234,701 + +0.1 234,701 + -0.4 234,701 + +0.5 234,702 - -0.3 234,702 - +0.5 234,702 - -0.3 234,885 + GFF2638 0.35 -0.1 234,885 + GFF2638 0.35 -0.2 234,885 + GFF2638 0.35 -0.3 234,886 - GFF2638 0.35 -0.8 234,886 - GFF2638 0.35 +0.7 234,886 - GFF2638 0.35 -0.1 234,886 - GFF2638 0.35 +0.8 235,098 + GFF2638 0.80 +0.5 235,108 - GFF2638 0.82 -1.4 235,215 + -0.2 235,215 + +0.5 235,339 + GFF2639 0.23 +1.1 235,339 + GFF2639 0.23 +0.9 235,339 + GFF2639 0.23 -0.2 235,339 + GFF2639 0.23 -0.0 235,339 + GFF2639 0.23 +0.5 235,339 + GFF2639 0.23 +0.6 235,339 + GFF2639 0.23 -0.2 235,340 - GFF2639 0.23 -0.7 235,340 - GFF2639 0.23 -0.9 235,340 - GFF2639 0.23 -0.4 235,340 - GFF2639 0.23 -0.1 235,642 + GFF2639 0.86 -0.3 235,776 + GFF2640 0.23 -0.0 236,439 - GFF2641 0.30 -0.5 236,439 - GFF2641 0.30 -0.1
Or see this region's nucleotide sequence