Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF258

Experiment: Ying_AminoAcid20 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF257 and GFF258 overlap by 1 nucleotidesGFF258 and GFF259 are separated by 109 nucleotidesGFF259 and GFF260 are separated by 40 nucleotides GFF257 - Sulfur oxidation molybdopterin C protein, at 272,523 to 273,866 GFF257 GFF258 - Sulfite dehydrogenase cytochrome subunit SoxD, at 273,866 to 274,933 GFF258 GFF259 - Cytochrome c551/c552, at 275,043 to 275,381 GFF259 GFF260 - Sulfur oxidation protein SoxY, at 275,422 to 275,877 GFF260 Position (kb) 273 274 275Strain fitness (log2 ratio) -2 -1 0 1 2at 273.105 kb on + strand, within GFF257at 273.105 kb on + strand, within GFF257at 273.105 kb on + strand, within GFF257at 273.106 kb on - strand, within GFF257at 273.106 kb on - strand, within GFF257at 273.106 kb on - strand, within GFF257at 273.198 kb on + strand, within GFF257at 273.198 kb on + strand, within GFF257at 273.198 kb on + strand, within GFF257at 273.198 kb on + strand, within GFF257at 273.198 kb on + strand, within GFF257at 273.198 kb on + strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.199 kb on - strand, within GFF257at 273.372 kb on + strand, within GFF257at 273.372 kb on + strand, within GFF257at 273.373 kb on - strand, within GFF257at 273.373 kb on - strand, within GFF257at 273.432 kb on + strand, within GFF257at 273.432 kb on + strand, within GFF257at 273.433 kb on - strand, within GFF257at 273.433 kb on - strand, within GFF257at 273.433 kb on - strand, within GFF257at 273.433 kb on - strand, within GFF257at 273.433 kb on - strand, within GFF257at 273.433 kb on - strand, within GFF257at 273.433 kb on - strand, within GFF257at 273.540 kb on + strand, within GFF257at 273.540 kb on + strand, within GFF257at 273.540 kb on + strand, within GFF257at 273.541 kb on - strand, within GFF257at 273.541 kb on - strand, within GFF257at 273.541 kb on - strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.543 kb on + strand, within GFF257at 273.544 kb on - strand, within GFF257at 273.544 kb on - strand, within GFF257at 273.544 kb on - strand, within GFF257at 273.544 kb on - strand, within GFF257at 273.544 kb on - strand, within GFF257at 273.544 kb on - strand, within GFF257at 273.544 kb on - strand, within GFF257at 273.544 kb on - strand, within GFF257at 273.544 kb on - strand, within GFF257at 273.741 kb on + strandat 273.742 kb on - strandat 273.742 kb on - strandat 273.742 kb on - strandat 273.795 kb on + strandat 273.795 kb on + strandat 273.795 kb on + strandat 273.795 kb on + strandat 273.796 kb on - strandat 273.796 kb on - strandat 274.250 kb on + strand, within GFF258at 274.250 kb on + strand, within GFF258at 274.250 kb on + strand, within GFF258at 274.251 kb on - strand, within GFF258at 274.251 kb on - strand, within GFF258at 274.251 kb on - strand, within GFF258at 274.251 kb on - strand, within GFF258at 274.307 kb on + strand, within GFF258at 274.307 kb on + strand, within GFF258at 274.307 kb on + strand, within GFF258at 274.307 kb on + strand, within GFF258at 274.308 kb on - strand, within GFF258at 274.308 kb on - strand, within GFF258at 274.308 kb on - strand, within GFF258at 274.323 kb on - strand, within GFF258at 274.323 kb on - strand, within GFF258at 274.805 kb on + strand, within GFF258at 274.805 kb on + strand, within GFF258at 274.805 kb on + strand, within GFF258at 274.806 kb on - strand, within GFF258at 274.844 kb on + strandat 274.844 kb on + strandat 274.977 kb on + strandat 274.977 kb on + strandat 274.977 kb on + strandat 274.977 kb on + strandat 274.977 kb on + strandat 274.978 kb on - strandat 274.978 kb on - strandat 274.985 kb on + strandat 274.985 kb on + strandat 274.986 kb on - strandat 274.986 kb on - strandat 274.986 kb on - strandat 274.986 kb on - strandat 274.989 kb on + strandat 274.990 kb on - strandat 274.999 kb on + strandat 275.000 kb on - strandat 275.005 kb on + strandat 275.006 kb on - strandat 275.006 kb on - strandat 275.037 kb on + strandat 275.037 kb on + strandat 275.037 kb on + strandat 275.038 kb on - strandat 275.038 kb on - strandat 275.042 kb on + strandat 275.042 kb on + strandat 275.042 kb on + strandat 275.042 kb on + strandat 275.042 kb on + strandat 275.042 kb on + strandat 275.042 kb on + strandat 275.043 kb on - strandat 275.043 kb on - strandat 275.287 kb on - strand, within GFF259at 275.287 kb on - strand, within GFF259at 275.379 kb on + strandat 275.379 kb on + strandat 275.379 kb on + strandat 275.379 kb on + strandat 275.379 kb on + strandat 275.380 kb on - strandat 275.687 kb on - strand, within GFF260at 275.828 kb on - strand, within GFF260at 275.828 kb on - strand, within GFF260at 275.922 kb on + strandat 275.923 kb on - strandat 275.923 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1
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273,105 + GFF257 0.43 +1.2
273,105 + GFF257 0.43 -0.1
273,105 + GFF257 0.43 -0.0
273,106 - GFF257 0.43 +2.0
273,106 - GFF257 0.43 -0.0
273,106 - GFF257 0.43 +0.3
273,198 + GFF257 0.50 +0.3
273,198 + GFF257 0.50 +0.5
273,198 + GFF257 0.50 +0.2
273,198 + GFF257 0.50 +0.5
273,198 + GFF257 0.50 +0.7
273,198 + GFF257 0.50 -0.1
273,199 - GFF257 0.50 +0.2
273,199 - GFF257 0.50 +0.8
273,199 - GFF257 0.50 -0.5
273,199 - GFF257 0.50 +0.4
273,199 - GFF257 0.50 -2.0
273,199 - GFF257 0.50 -0.2
273,199 - GFF257 0.50 -0.1
273,199 - GFF257 0.50 +0.0
273,199 - GFF257 0.50 +0.3
273,199 - GFF257 0.50 +0.8
273,199 - GFF257 0.50 +0.1
273,199 - GFF257 0.50 -0.1
273,372 + GFF257 0.63 -1.1
273,372 + GFF257 0.63 +0.6
273,373 - GFF257 0.63 +0.4
273,373 - GFF257 0.63 -0.2
273,432 + GFF257 0.68 +0.1
273,432 + GFF257 0.68 -0.2
273,433 - GFF257 0.68 -0.7
273,433 - GFF257 0.68 +0.5
273,433 - GFF257 0.68 -0.0
273,433 - GFF257 0.68 -0.3
273,433 - GFF257 0.68 +0.4
273,433 - GFF257 0.68 +1.1
273,433 - GFF257 0.68 +0.3
273,540 + GFF257 0.76 +1.3
273,540 + GFF257 0.76 -0.0
273,540 + GFF257 0.76 +0.6
273,541 - GFF257 0.76 -0.4
273,541 - GFF257 0.76 -0.2
273,541 - GFF257 0.76 -0.3
273,543 + GFF257 0.76 +0.7
273,543 + GFF257 0.76 +1.1
273,543 + GFF257 0.76 +1.3
273,543 + GFF257 0.76 +0.2
273,543 + GFF257 0.76 +0.4
273,543 + GFF257 0.76 +0.4
273,543 + GFF257 0.76 -0.7
273,543 + GFF257 0.76 -0.3
273,543 + GFF257 0.76 +0.1
273,543 + GFF257 0.76 +0.6
273,543 + GFF257 0.76 +0.8
273,543 + GFF257 0.76 -0.2
273,543 + GFF257 0.76 -0.7
273,544 - GFF257 0.76 +0.6
273,544 - GFF257 0.76 -0.2
273,544 - GFF257 0.76 -0.4
273,544 - GFF257 0.76 -0.3
273,544 - GFF257 0.76 +0.1
273,544 - GFF257 0.76 -1.1
273,544 - GFF257 0.76 +0.5
273,544 - GFF257 0.76 -0.1
273,544 - GFF257 0.76 -0.3
273,741 + -0.4
273,742 - -0.1
273,742 - -0.0
273,742 - -0.3
273,795 + -0.5
273,795 + +1.1
273,795 + +0.2
273,795 + -0.6
273,796 - +0.4
273,796 - -0.5
274,250 + GFF258 0.36 +0.0
274,250 + GFF258 0.36 -0.1
274,250 + GFF258 0.36 -0.1
274,251 - GFF258 0.36 +0.3
274,251 - GFF258 0.36 +0.6
274,251 - GFF258 0.36 +0.5
274,251 - GFF258 0.36 -0.1
274,307 + GFF258 0.41 -0.2
274,307 + GFF258 0.41 +0.3
274,307 + GFF258 0.41 +1.3
274,307 + GFF258 0.41 +0.4
274,308 - GFF258 0.41 +0.5
274,308 - GFF258 0.41 -1.5
274,308 - GFF258 0.41 +0.1
274,323 - GFF258 0.43 +0.5
274,323 - GFF258 0.43 -0.2
274,805 + GFF258 0.88 -0.0
274,805 + GFF258 0.88 +0.2
274,805 + GFF258 0.88 +0.2
274,806 - GFF258 0.88 +0.2
274,844 + +2.2
274,844 + +0.5
274,977 + +0.3
274,977 + -0.3
274,977 + -0.1
274,977 + +0.1
274,977 + +0.8
274,978 - +0.9
274,978 - +0.1
274,985 + -0.1
274,985 + +0.3
274,986 - +0.2
274,986 - +0.3
274,986 - +0.2
274,986 - -2.2
274,989 + -0.2
274,990 - -0.4
274,999 + -0.1
275,000 - -0.2
275,005 + +0.6
275,006 - +0.4
275,006 - -0.4
275,037 + +0.0
275,037 + +1.0
275,037 + -0.1
275,038 - +0.5
275,038 - -0.8
275,042 + -0.1
275,042 + +0.5
275,042 + -0.4
275,042 + +0.2
275,042 + -0.5
275,042 + -0.9
275,042 + +0.2
275,043 - -0.9
275,043 - +0.8
275,287 - GFF259 0.72 +0.4
275,287 - GFF259 0.72 +0.4
275,379 + -0.3
275,379 + +0.8
275,379 + -0.7
275,379 + -0.2
275,379 + +0.1
275,380 - +0.1
275,687 - GFF260 0.58 -0.2
275,828 - GFF260 0.89 -0.8
275,828 - GFF260 0.89 -0.5
275,922 + -0.5
275,923 - -0.8
275,923 - -0.7

Or see this region's nucleotide sequence