Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF205 and GFF206 overlap by 14 nucleotides GFF206 and GFF207 are separated by 3 nucleotides
GFF205 - ABC transporter ATP-binding protein, at 221,954 to 223,498
GFF205
GFF206 - Nucleoside ABC transporter, permease protein 1, at 223,485 to 224,540
GFF206
GFF207 - Nucleoside ABC transporter, permease protein 2, at 224,544 to 225,464
GFF207
Position (kb) 223
224
225 Strain fitness (log2 ratio) -1
0
1 at 222.527 kb on + strand, within GFF205 at 222.527 kb on + strand, within GFF205 at 223.103 kb on + strand, within GFF205 at 223.103 kb on + strand, within GFF205 at 223.103 kb on + strand, within GFF205 at 223.104 kb on - strand, within GFF205 at 223.530 kb on + strand at 223.531 kb on - strand at 223.653 kb on + strand, within GFF206 at 223.761 kb on + strand, within GFF206 at 223.761 kb on + strand, within GFF206 at 223.761 kb on + strand, within GFF206 at 223.762 kb on - strand, within GFF206 at 223.762 kb on - strand, within GFF206 at 223.762 kb on - strand, within GFF206 at 223.762 kb on - strand, within GFF206 at 223.944 kb on + strand, within GFF206 at 223.945 kb on - strand, within GFF206 at 224.004 kb on + strand, within GFF206 at 224.005 kb on - strand, within GFF206 at 224.139 kb on + strand, within GFF206 at 224.304 kb on + strand, within GFF206 at 224.304 kb on + strand, within GFF206 at 224.406 kb on + strand, within GFF206 at 224.406 kb on + strand, within GFF206 at 224.505 kb on - strand at 224.539 kb on - strand at 224.808 kb on + strand, within GFF207 at 224.871 kb on + strand, within GFF207 at 224.872 kb on - strand, within GFF207 at 224.872 kb on - strand, within GFF207 at 224.973 kb on + strand, within GFF207 at 224.973 kb on + strand, within GFF207 at 224.973 kb on + strand, within GFF207 at 224.973 kb on + strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 224.974 kb on - strand, within GFF207 at 225.153 kb on + strand, within GFF207 at 225.153 kb on + strand, within GFF207 at 225.153 kb on + strand, within GFF207 at 225.273 kb on + strand, within GFF207 at 225.274 kb on - strand, within GFF207 at 225.360 kb on + strand, within GFF207 at 225.361 kb on - strand, within GFF207 at 225.361 kb on - strand, within GFF207 at 225.361 kb on - strand, within GFF207 at 225.462 kb on + strand at 225.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 222,527 + GFF205 0.37 -0.1 222,527 + GFF205 0.37 -0.1 223,103 + GFF205 0.74 -0.8 223,103 + GFF205 0.74 +0.0 223,103 + GFF205 0.74 -0.1 223,104 - GFF205 0.74 -0.8 223,530 + +0.8 223,531 - -0.2 223,653 + GFF206 0.16 +0.6 223,761 + GFF206 0.26 -0.3 223,761 + GFF206 0.26 +0.0 223,761 + GFF206 0.26 -0.5 223,762 - GFF206 0.26 -1.0 223,762 - GFF206 0.26 +0.6 223,762 - GFF206 0.26 +0.2 223,762 - GFF206 0.26 -0.3 223,944 + GFF206 0.43 +1.3 223,945 - GFF206 0.44 -0.1 224,004 + GFF206 0.49 -0.7 224,005 - GFF206 0.49 +0.3 224,139 + GFF206 0.62 +1.4 224,304 + GFF206 0.78 +1.1 224,304 + GFF206 0.78 -0.1 224,406 + GFF206 0.87 +0.2 224,406 + GFF206 0.87 +0.5 224,505 - +0.5 224,539 - -0.8 224,808 + GFF207 0.29 -0.5 224,871 + GFF207 0.36 +1.1 224,872 - GFF207 0.36 -0.3 224,872 - GFF207 0.36 -0.3 224,973 + GFF207 0.47 +0.1 224,973 + GFF207 0.47 -0.0 224,973 + GFF207 0.47 +1.2 224,973 + GFF207 0.47 -0.2 224,974 - GFF207 0.47 -0.4 224,974 - GFF207 0.47 -0.0 224,974 - GFF207 0.47 -0.2 224,974 - GFF207 0.47 -1.2 224,974 - GFF207 0.47 +0.4 225,153 + GFF207 0.66 -0.3 225,153 + GFF207 0.66 +0.0 225,153 + GFF207 0.66 -0.1 225,273 + GFF207 0.79 -0.3 225,274 - GFF207 0.79 +1.3 225,360 + GFF207 0.89 +0.8 225,361 - GFF207 0.89 -0.2 225,361 - GFF207 0.89 +0.1 225,361 - GFF207 0.89 -0.2 225,462 + -0.1 225,463 - +0.7
Or see this region's nucleotide sequence