Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1912 and GFF1913 are separated by 19 nucleotides GFF1913 and GFF1914 are separated by 10 nucleotides GFF1914 and GFF1915 are separated by 0 nucleotides
GFF1912 - integral membrane protein, at 785,098 to 786,570
GFF1912
GFF1913 - Permease of the drug/metabolite transporter (DMT) superfamily, at 786,590 to 786,952
GFF1913
GFF1914 - FIG00931613: hypothetical protein, at 786,963 to 788,510
GFF1914
GFF1915 - Alanine racemase (EC 5.1.1.1), at 788,511 to 789,623
GFF1915
Position (kb) 786
787
788
789 Strain fitness (log2 ratio) -2
-1
0
1 at 786.028 kb on + strand, within GFF1912 at 786.029 kb on - strand, within GFF1912 at 786.029 kb on - strand, within GFF1912 at 786.050 kb on - strand, within GFF1912 at 786.058 kb on + strand, within GFF1912 at 786.058 kb on + strand, within GFF1912 at 786.058 kb on + strand, within GFF1912 at 786.058 kb on + strand, within GFF1912 at 786.106 kb on + strand, within GFF1912 at 786.107 kb on - strand, within GFF1912 at 786.107 kb on - strand, within GFF1912 at 786.349 kb on + strand, within GFF1912 at 786.350 kb on - strand, within GFF1912 at 786.379 kb on + strand, within GFF1912 at 786.379 kb on + strand, within GFF1912 at 786.380 kb on - strand, within GFF1912 at 786.380 kb on - strand, within GFF1912 at 786.380 kb on - strand, within GFF1912 at 786.707 kb on + strand, within GFF1913 at 786.707 kb on + strand, within GFF1913 at 786.708 kb on - strand, within GFF1913 at 786.755 kb on + strand, within GFF1913 at 786.756 kb on - strand, within GFF1913 at 787.089 kb on + strand at 787.119 kb on + strand, within GFF1914 at 787.120 kb on - strand, within GFF1914 at 787.120 kb on - strand, within GFF1914 at 787.305 kb on + strand, within GFF1914 at 787.305 kb on + strand, within GFF1914 at 787.305 kb on + strand, within GFF1914 at 787.305 kb on + strand, within GFF1914 at 787.306 kb on - strand, within GFF1914 at 787.392 kb on + strand, within GFF1914 at 787.393 kb on - strand, within GFF1914 at 787.393 kb on - strand, within GFF1914 at 787.393 kb on - strand, within GFF1914 at 787.393 kb on - strand, within GFF1914 at 787.437 kb on + strand, within GFF1914 at 787.437 kb on + strand, within GFF1914 at 787.438 kb on - strand, within GFF1914 at 787.438 kb on - strand, within GFF1914 at 787.482 kb on + strand, within GFF1914 at 787.482 kb on + strand, within GFF1914 at 787.483 kb on - strand, within GFF1914 at 787.483 kb on - strand, within GFF1914 at 787.483 kb on - strand, within GFF1914 at 787.510 kb on - strand, within GFF1914 at 787.695 kb on + strand, within GFF1914 at 787.696 kb on - strand, within GFF1914 at 787.696 kb on - strand, within GFF1914 at 787.696 kb on - strand, within GFF1914 at 787.713 kb on + strand, within GFF1914 at 787.714 kb on - strand, within GFF1914 at 788.127 kb on + strand, within GFF1914 at 788.166 kb on + strand, within GFF1914 at 788.166 kb on + strand, within GFF1914 at 788.167 kb on - strand, within GFF1914 at 788.167 kb on - strand, within GFF1914 at 788.236 kb on - strand, within GFF1914 at 788.298 kb on + strand, within GFF1914 at 788.299 kb on - strand, within GFF1914 at 788.299 kb on - strand, within GFF1914 at 788.349 kb on + strand, within GFF1914 at 788.349 kb on + strand, within GFF1914 at 788.349 kb on + strand, within GFF1914 at 788.349 kb on + strand, within GFF1914 at 788.350 kb on - strand, within GFF1914 at 788.376 kb on + strand at 788.376 kb on + strand at 788.377 kb on - strand at 788.377 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 786,028 + GFF1912 0.63 -0.2 786,029 - GFF1912 0.63 +0.1 786,029 - GFF1912 0.63 +0.4 786,050 - GFF1912 0.65 -1.7 786,058 + GFF1912 0.65 +0.5 786,058 + GFF1912 0.65 -0.7 786,058 + GFF1912 0.65 +0.2 786,058 + GFF1912 0.65 -0.6 786,106 + GFF1912 0.68 -0.6 786,107 - GFF1912 0.68 -0.7 786,107 - GFF1912 0.68 +0.7 786,349 + GFF1912 0.85 -0.3 786,350 - GFF1912 0.85 -0.9 786,379 + GFF1912 0.87 -1.1 786,379 + GFF1912 0.87 -1.5 786,380 - GFF1912 0.87 -2.4 786,380 - GFF1912 0.87 -0.0 786,380 - GFF1912 0.87 -0.8 786,707 + GFF1913 0.32 -0.2 786,707 + GFF1913 0.32 +0.1 786,708 - GFF1913 0.33 -0.5 786,755 + GFF1913 0.45 +0.5 786,756 - GFF1913 0.46 +1.2 787,089 + -0.4 787,119 + GFF1914 0.10 -0.3 787,120 - GFF1914 0.10 -0.5 787,120 - GFF1914 0.10 -0.3 787,305 + GFF1914 0.22 -1.3 787,305 + GFF1914 0.22 +0.2 787,305 + GFF1914 0.22 -0.3 787,305 + GFF1914 0.22 -1.2 787,306 - GFF1914 0.22 +0.1 787,392 + GFF1914 0.28 -0.0 787,393 - GFF1914 0.28 -0.8 787,393 - GFF1914 0.28 -0.8 787,393 - GFF1914 0.28 -2.4 787,393 - GFF1914 0.28 -0.7 787,437 + GFF1914 0.31 +0.5 787,437 + GFF1914 0.31 -1.5 787,438 - GFF1914 0.31 -0.5 787,438 - GFF1914 0.31 -1.4 787,482 + GFF1914 0.34 -0.3 787,482 + GFF1914 0.34 +0.1 787,483 - GFF1914 0.34 -0.8 787,483 - GFF1914 0.34 -0.1 787,483 - GFF1914 0.34 -0.1 787,510 - GFF1914 0.35 -0.7 787,695 + GFF1914 0.47 -0.0 787,696 - GFF1914 0.47 +0.3 787,696 - GFF1914 0.47 -0.3 787,696 - GFF1914 0.47 +0.1 787,713 + GFF1914 0.48 -1.0 787,714 - GFF1914 0.49 -1.4 788,127 + GFF1914 0.75 -0.5 788,166 + GFF1914 0.78 -0.3 788,166 + GFF1914 0.78 -0.0 788,167 - GFF1914 0.78 -1.6 788,167 - GFF1914 0.78 -0.6 788,236 - GFF1914 0.82 +0.3 788,298 + GFF1914 0.86 -1.1 788,299 - GFF1914 0.86 -0.6 788,299 - GFF1914 0.86 -1.2 788,349 + GFF1914 0.90 -0.3 788,349 + GFF1914 0.90 -0.8 788,349 + GFF1914 0.90 -0.9 788,349 + GFF1914 0.90 -1.3 788,350 - GFF1914 0.90 +0.3 788,376 + -0.8 788,376 + -0.1 788,377 - -0.0 788,377 - -0.0
Or see this region's nucleotide sequence