Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1857 and GFF1858 overlap by 4 nucleotides GFF1858 and GFF1859 overlap by 4 nucleotides GFF1859 and GFF1860 overlap by 4 nucleotides GFF1860 and GFF1861 overlap by 4 nucleotides
GFF1857 - SAM-dependent methyltransferases, at 721,055 to 721,963
GFF1857
GFF1858 - glycosyl transferase family 2, at 721,960 to 722,808
GFF1858
GFF1859 - CgeB family protein, at 722,805 to 723,941
GFF1859
GFF1860 - Radical SAM, at 723,938 to 724,741
GFF1860
GFF1861 - identified by sequence similarity; putative; ORF located using Blastx/Glimmer, at 724,738 to 725,712
GFF1861
Position (kb) 722
723
724 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 722.533 kb on + strand, within GFF1858 at 722.533 kb on + strand, within GFF1858 at 722.533 kb on + strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.534 kb on - strand, within GFF1858 at 722.545 kb on + strand, within GFF1858 at 722.545 kb on + strand, within GFF1858 at 722.546 kb on - strand, within GFF1858 at 722.546 kb on - strand, within GFF1858 at 722.578 kb on + strand, within GFF1858 at 722.819 kb on - strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.829 kb on + strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.830 kb on - strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.832 kb on + strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.833 kb on - strand at 722.857 kb on - strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.889 kb on + strand at 722.943 kb on + strand, within GFF1859 at 722.943 kb on + strand, within GFF1859 at 722.943 kb on + strand, within GFF1859 at 722.944 kb on - strand, within GFF1859 at 722.944 kb on - strand, within GFF1859 at 722.944 kb on - strand, within GFF1859 at 723.174 kb on + strand, within GFF1859 at 723.174 kb on + strand, within GFF1859 at 723.174 kb on + strand, within GFF1859 at 723.175 kb on - strand, within GFF1859 at 723.175 kb on - strand, within GFF1859 at 723.175 kb on - strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.228 kb on + strand, within GFF1859 at 723.229 kb on - strand, within GFF1859 at 723.229 kb on - strand, within GFF1859 at 723.229 kb on - strand, within GFF1859 at 723.291 kb on + strand, within GFF1859 at 723.291 kb on + strand, within GFF1859 at 723.292 kb on - strand, within GFF1859 at 723.361 kb on - strand, within GFF1859 at 723.361 kb on - strand, within GFF1859 at 723.361 kb on - strand, within GFF1859 at 723.361 kb on - strand, within GFF1859 at 723.469 kb on + strand, within GFF1859 at 723.483 kb on + strand, within GFF1859 at 723.483 kb on + strand, within GFF1859 at 723.483 kb on + strand, within GFF1859 at 723.483 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.594 kb on + strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.595 kb on - strand, within GFF1859 at 723.675 kb on + strand, within GFF1859 at 723.675 kb on + strand, within GFF1859 at 723.676 kb on - strand, within GFF1859 at 723.676 kb on - strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.765 kb on + strand, within GFF1859 at 723.804 kb on + strand, within GFF1859 at 723.805 kb on - strand, within GFF1859 at 723.805 kb on - strand, within GFF1859 at 723.876 kb on + strand at 723.877 kb on - strand at 723.877 kb on - strand at 723.877 kb on - strand at 723.891 kb on + strand at 724.043 kb on + strand, within GFF1860 at 724.043 kb on + strand, within GFF1860 at 724.043 kb on + strand, within GFF1860 at 724.043 kb on + strand, within GFF1860 at 724.043 kb on + strand, within GFF1860 at 724.043 kb on + strand, within GFF1860 at 724.043 kb on + strand, within GFF1860 at 724.044 kb on - strand, within GFF1860 at 724.044 kb on - strand, within GFF1860 at 724.044 kb on - strand, within GFF1860 at 724.044 kb on - strand, within GFF1860 at 724.044 kb on - strand, within GFF1860 at 724.274 kb on + strand, within GFF1860 at 724.274 kb on + strand, within GFF1860 at 724.275 kb on - strand, within GFF1860 at 724.275 kb on - strand, within GFF1860 at 724.275 kb on - strand, within GFF1860 at 724.313 kb on + strand, within GFF1860 at 724.313 kb on + strand, within GFF1860 at 724.314 kb on - strand, within GFF1860 at 724.314 kb on - strand, within GFF1860 at 724.365 kb on - strand, within GFF1860 at 724.365 kb on - strand, within GFF1860 at 724.469 kb on + strand, within GFF1860 at 724.469 kb on + strand, within GFF1860 at 724.470 kb on - strand, within GFF1860 at 724.511 kb on + strand, within GFF1860 at 724.512 kb on - strand, within GFF1860 at 724.512 kb on - strand, within GFF1860 at 724.559 kb on + strand, within GFF1860 at 724.559 kb on + strand, within GFF1860 at 724.560 kb on - strand, within GFF1860 at 724.562 kb on + strand, within GFF1860 at 724.563 kb on - strand, within GFF1860 at 724.563 kb on - strand, within GFF1860 at 724.563 kb on - strand, within GFF1860 at 724.563 kb on - strand, within GFF1860 at 724.563 kb on - strand, within GFF1860 at 724.563 kb on - strand, within GFF1860 at 724.563 kb on - strand, within GFF1860 at 724.577 kb on + strand, within GFF1860 at 724.578 kb on - strand, within GFF1860 at 724.578 kb on - strand, within GFF1860 at 724.600 kb on - strand, within GFF1860 at 724.664 kb on + strand at 724.664 kb on + strand at 724.664 kb on + strand at 724.664 kb on + strand at 724.665 kb on - strand at 724.665 kb on - strand at 724.665 kb on - strand at 724.715 kb on + strand at 724.715 kb on + strand at 724.715 kb on + strand at 724.715 kb on + strand at 724.715 kb on + strand at 724.715 kb on + strand at 724.716 kb on - strand at 724.716 kb on - strand at 724.716 kb on - strand at 724.716 kb on - strand at 724.716 kb on - strand at 724.716 kb on - strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.777 kb on + strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.778 kb on - strand at 724.907 kb on - strand, within GFF1861
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 722,533 + GFF1858 0.67 -1.1 722,533 + GFF1858 0.67 -3.7 722,533 + GFF1858 0.67 -1.9 722,534 - GFF1858 0.68 -4.2 722,534 - GFF1858 0.68 -1.2 722,534 - GFF1858 0.68 -2.8 722,534 - GFF1858 0.68 -3.6 722,534 - GFF1858 0.68 -3.5 722,545 + GFF1858 0.69 -3.2 722,545 + GFF1858 0.69 -2.5 722,546 - GFF1858 0.69 -2.9 722,546 - GFF1858 0.69 -1.0 722,578 + GFF1858 0.73 -1.6 722,819 - -2.3 722,829 + -5.7 722,829 + -2.1 722,829 + -2.7 722,829 + -0.8 722,829 + -4.0 722,829 + -3.3 722,829 + -4.3 722,829 + -4.2 722,829 + -1.3 722,830 - -1.9 722,830 - -2.5 722,830 - -1.3 722,830 - -4.0 722,830 - -3.9 722,830 - -1.5 722,830 - -2.2 722,832 + -1.3 722,832 + -2.8 722,832 + -2.3 722,832 + -3.1 722,832 + -3.8 722,832 + -1.6 722,832 + -3.9 722,832 + -1.3 722,832 + -3.2 722,833 - -3.7 722,833 - -3.1 722,833 - -3.3 722,833 - -4.0 722,833 - -4.2 722,833 - -4.7 722,857 - -3.8 722,889 + -0.8 722,889 + +1.2 722,889 + -3.0 722,889 + -3.5 722,889 + -4.1 722,889 + -2.9 722,943 + GFF1859 0.12 -1.0 722,943 + GFF1859 0.12 -1.8 722,943 + GFF1859 0.12 -3.9 722,944 - GFF1859 0.12 -4.6 722,944 - GFF1859 0.12 -1.7 722,944 - GFF1859 0.12 -3.9 723,174 + GFF1859 0.32 -1.0 723,174 + GFF1859 0.32 -1.5 723,174 + GFF1859 0.32 -5.2 723,175 - GFF1859 0.33 -2.0 723,175 - GFF1859 0.33 -1.0 723,175 - GFF1859 0.33 -1.0 723,228 + GFF1859 0.37 -4.0 723,228 + GFF1859 0.37 -4.1 723,228 + GFF1859 0.37 -3.4 723,228 + GFF1859 0.37 -1.8 723,228 + GFF1859 0.37 -2.4 723,228 + GFF1859 0.37 -3.3 723,229 - GFF1859 0.37 -3.7 723,229 - GFF1859 0.37 -1.6 723,229 - GFF1859 0.37 -3.8 723,291 + GFF1859 0.43 -0.5 723,291 + GFF1859 0.43 -2.9 723,292 - GFF1859 0.43 -3.7 723,361 - GFF1859 0.49 -3.4 723,361 - GFF1859 0.49 -2.0 723,361 - GFF1859 0.49 -1.9 723,361 - GFF1859 0.49 -1.8 723,469 + GFF1859 0.58 -2.3 723,483 + GFF1859 0.60 -3.3 723,483 + GFF1859 0.60 -2.7 723,483 + GFF1859 0.60 -3.0 723,483 + GFF1859 0.60 -4.4 723,594 + GFF1859 0.69 -3.3 723,594 + GFF1859 0.69 -1.6 723,594 + GFF1859 0.69 -2.2 723,594 + GFF1859 0.69 -3.4 723,594 + GFF1859 0.69 -1.3 723,594 + GFF1859 0.69 -1.5 723,594 + GFF1859 0.69 -0.0 723,594 + GFF1859 0.69 -3.5 723,594 + GFF1859 0.69 -1.5 723,594 + GFF1859 0.69 -3.4 723,594 + GFF1859 0.69 -3.8 723,594 + GFF1859 0.69 -0.8 723,594 + GFF1859 0.69 -3.5 723,595 - GFF1859 0.69 -0.3 723,595 - GFF1859 0.69 -2.6 723,595 - GFF1859 0.69 -3.9 723,595 - GFF1859 0.69 -2.6 723,595 - GFF1859 0.69 -3.1 723,595 - GFF1859 0.69 -1.5 723,675 + GFF1859 0.77 -2.3 723,675 + GFF1859 0.77 -4.4 723,676 - GFF1859 0.77 -5.0 723,676 - GFF1859 0.77 -0.8 723,765 + GFF1859 0.84 -4.1 723,765 + GFF1859 0.84 -2.0 723,765 + GFF1859 0.84 -2.8 723,765 + GFF1859 0.84 -1.5 723,765 + GFF1859 0.84 -3.8 723,765 + GFF1859 0.84 -3.1 723,804 + GFF1859 0.88 -2.9 723,805 - GFF1859 0.88 -1.0 723,805 - GFF1859 0.88 -2.0 723,876 + -3.2 723,877 - -3.9 723,877 - -1.8 723,877 - -2.0 723,891 + -2.6 724,043 + GFF1860 0.13 -1.4 724,043 + GFF1860 0.13 -1.8 724,043 + GFF1860 0.13 -0.9 724,043 + GFF1860 0.13 -1.8 724,043 + GFF1860 0.13 -1.8 724,043 + GFF1860 0.13 -4.3 724,043 + GFF1860 0.13 -1.8 724,044 - GFF1860 0.13 -1.6 724,044 - GFF1860 0.13 -1.1 724,044 - GFF1860 0.13 -2.1 724,044 - GFF1860 0.13 -1.9 724,044 - GFF1860 0.13 -1.5 724,274 + GFF1860 0.42 -0.3 724,274 + GFF1860 0.42 -0.9 724,275 - GFF1860 0.42 -0.5 724,275 - GFF1860 0.42 -2.2 724,275 - GFF1860 0.42 -2.7 724,313 + GFF1860 0.47 -2.6 724,313 + GFF1860 0.47 -1.0 724,314 - GFF1860 0.47 -1.0 724,314 - GFF1860 0.47 -2.2 724,365 - GFF1860 0.53 +0.3 724,365 - GFF1860 0.53 -1.8 724,469 + GFF1860 0.66 -1.7 724,469 + GFF1860 0.66 -2.5 724,470 - GFF1860 0.66 -1.7 724,511 + GFF1860 0.71 -1.4 724,512 - GFF1860 0.71 -1.1 724,512 - GFF1860 0.71 -1.1 724,559 + GFF1860 0.77 -0.7 724,559 + GFF1860 0.77 -3.0 724,560 - GFF1860 0.77 +0.4 724,562 + GFF1860 0.78 -1.9 724,563 - GFF1860 0.78 -1.3 724,563 - GFF1860 0.78 -1.6 724,563 - GFF1860 0.78 -0.6 724,563 - GFF1860 0.78 +0.4 724,563 - GFF1860 0.78 -1.4 724,563 - GFF1860 0.78 -2.3 724,563 - GFF1860 0.78 -2.4 724,577 + GFF1860 0.79 -1.8 724,578 - GFF1860 0.80 -1.3 724,578 - GFF1860 0.80 -2.2 724,600 - GFF1860 0.82 -1.7 724,664 + -1.7 724,664 + -3.4 724,664 + -2.5 724,664 + +0.2 724,665 - -1.4 724,665 - -1.5 724,665 - -1.6 724,715 + -1.4 724,715 + -2.4 724,715 + +0.2 724,715 + -2.1 724,715 + -1.8 724,715 + -1.7 724,716 - -1.5 724,716 - -1.9 724,716 - -1.6 724,716 - -1.8 724,716 - -1.1 724,716 - -0.8 724,777 + -4.2 724,777 + -3.1 724,777 + -5.1 724,777 + -1.6 724,777 + -4.4 724,777 + -2.0 724,777 + -0.6 724,777 + -3.0 724,777 + -4.0 724,777 + -3.6 724,777 + -2.5 724,778 - -2.2 724,778 - -1.3 724,778 - -4.5 724,778 - -4.6 724,778 - -4.0 724,778 - -2.2 724,778 - -1.2 724,778 - -3.3 724,778 - -1.3 724,778 - -2.7 724,778 - -1.1 724,778 - -2.5 724,907 - GFF1861 0.17 -3.4
Or see this region's nucleotide sequence