Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1815

Experiment: Ying_AminoAcid20 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1813 and GFF1814 are separated by 3 nucleotidesGFF1814 and GFF1815 are separated by 5 nucleotidesGFF1815 and GFF1816 are separated by 86 nucleotidesGFF1816 and GFF1817 are separated by 29 nucleotides GFF1813 - Magnesium and cobalt transport protein CorA, at 680,787 to 681,896 GFF1813 GFF1814 - Glutathione S-transferase (EC 2.5.1.18), at 681,900 to 682,550 GFF1814 GFF1815 - amidohydrolase 2, at 682,556 to 683,449 GFF1815 GFF1816 - Dienelactone hydrolase family, at 683,536 to 684,219 GFF1816 GFF1817 - 2-hydroxychromene-2-carboxylate isomerase, at 684,249 to 684,848 GFF1817 Position (kb) 682 683 684Strain fitness (log2 ratio) -2 -1 0 1 2at 681.873 kb on + strandat 681.874 kb on - strandat 681.874 kb on - strandat 681.901 kb on + strandat 681.901 kb on + strandat 681.901 kb on + strandat 681.901 kb on + strandat 681.902 kb on - strandat 681.902 kb on - strandat 681.902 kb on - strandat 681.907 kb on + strandat 681.907 kb on + strandat 681.907 kb on + strandat 681.907 kb on + strandat 681.907 kb on + strandat 681.908 kb on - strandat 681.908 kb on - strandat 681.908 kb on - strandat 681.976 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.051 kb on + strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.052 kb on - strand, within GFF1814at 682.219 kb on + strand, within GFF1814at 682.219 kb on + strand, within GFF1814at 682.219 kb on + strand, within GFF1814at 682.219 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.220 kb on - strand, within GFF1814at 682.270 kb on + strand, within GFF1814at 682.270 kb on + strand, within GFF1814at 682.270 kb on + strand, within GFF1814at 682.270 kb on + strand, within GFF1814at 682.271 kb on - strand, within GFF1814at 682.271 kb on - strand, within GFF1814at 682.363 kb on + strand, within GFF1814at 682.363 kb on + strand, within GFF1814at 682.364 kb on - strand, within GFF1814at 682.423 kb on + strand, within GFF1814at 682.474 kb on + strand, within GFF1814at 682.474 kb on + strand, within GFF1814at 682.475 kb on - strand, within GFF1814at 682.674 kb on + strand, within GFF1815at 682.674 kb on + strand, within GFF1815at 682.674 kb on + strand, within GFF1815at 682.675 kb on - strand, within GFF1815at 682.675 kb on - strand, within GFF1815at 682.731 kb on + strand, within GFF1815at 682.731 kb on + strand, within GFF1815at 682.731 kb on + strand, within GFF1815at 682.732 kb on - strand, within GFF1815at 683.037 kb on + strand, within GFF1815at 683.037 kb on + strand, within GFF1815at 683.038 kb on - strand, within GFF1815at 683.038 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.143 kb on - strand, within GFF1815at 683.160 kb on + strand, within GFF1815at 683.161 kb on - strand, within GFF1815at 683.161 kb on - strand, within GFF1815at 683.361 kb on + strandat 683.361 kb on + strandat 683.362 kb on - strandat 683.362 kb on - strandat 683.394 kb on + strandat 683.394 kb on + strandat 683.394 kb on + strandat 683.395 kb on - strandat 683.603 kb on + strandat 683.603 kb on + strandat 683.603 kb on + strandat 683.603 kb on + strandat 683.604 kb on - strandat 683.604 kb on - strandat 683.792 kb on + strand, within GFF1816at 683.792 kb on + strand, within GFF1816at 683.792 kb on + strand, within GFF1816at 683.793 kb on - strand, within GFF1816at 683.793 kb on - strand, within GFF1816at 683.793 kb on - strand, within GFF1816at 683.793 kb on - strand, within GFF1816at 683.795 kb on + strand, within GFF1816at 683.796 kb on - strand, within GFF1816at 684.000 kb on - strand, within GFF1816at 684.056 kb on + strand, within GFF1816at 684.167 kb on + strandat 684.167 kb on + strandat 684.168 kb on - strandat 684.319 kb on + strand, within GFF1817at 684.319 kb on + strand, within GFF1817at 684.319 kb on + strand, within GFF1817at 684.319 kb on + strand, within GFF1817at 684.320 kb on - strand, within GFF1817at 684.320 kb on - strand, within GFF1817at 684.320 kb on - strand, within GFF1817at 684.374 kb on - strand, within GFF1817

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1
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681,873 + -0.2
681,874 - +0.2
681,874 - -0.5
681,901 + +0.0
681,901 + -0.4
681,901 + -0.6
681,901 + +0.2
681,902 - +0.5
681,902 - -0.6
681,902 - +0.4
681,907 + -0.5
681,907 + -0.4
681,907 + +0.1
681,907 + -0.3
681,907 + +0.7
681,908 - +1.5
681,908 - +0.8
681,908 - +0.2
681,976 + GFF1814 0.12 +0.9
682,051 + GFF1814 0.23 +0.2
682,051 + GFF1814 0.23 +0.4
682,051 + GFF1814 0.23 -0.1
682,051 + GFF1814 0.23 -0.1
682,051 + GFF1814 0.23 -0.7
682,051 + GFF1814 0.23 -0.2
682,051 + GFF1814 0.23 +0.8
682,052 - GFF1814 0.23 +0.6
682,052 - GFF1814 0.23 +0.4
682,052 - GFF1814 0.23 -0.1
682,052 - GFF1814 0.23 -0.7
682,052 - GFF1814 0.23 -0.1
682,052 - GFF1814 0.23 +0.5
682,052 - GFF1814 0.23 -0.6
682,052 - GFF1814 0.23 +0.2
682,052 - GFF1814 0.23 +0.5
682,219 + GFF1814 0.49 +0.2
682,219 + GFF1814 0.49 +0.4
682,219 + GFF1814 0.49 +0.6
682,219 - GFF1814 0.49 +0.1
682,220 - GFF1814 0.49 -0.5
682,220 - GFF1814 0.49 -0.2
682,220 - GFF1814 0.49 -0.3
682,220 - GFF1814 0.49 -0.4
682,220 - GFF1814 0.49 -0.5
682,270 + GFF1814 0.57 +2.1
682,270 + GFF1814 0.57 -0.2
682,270 + GFF1814 0.57 -0.2
682,270 + GFF1814 0.57 +0.5
682,271 - GFF1814 0.57 -0.1
682,271 - GFF1814 0.57 -0.2
682,363 + GFF1814 0.71 +0.4
682,363 + GFF1814 0.71 +0.6
682,364 - GFF1814 0.71 +0.4
682,423 + GFF1814 0.80 -0.1
682,474 + GFF1814 0.88 -0.5
682,474 + GFF1814 0.88 -0.4
682,475 - GFF1814 0.88 +0.3
682,674 + GFF1815 0.13 +0.4
682,674 + GFF1815 0.13 -0.8
682,674 + GFF1815 0.13 +0.9
682,675 - GFF1815 0.13 -0.3
682,675 - GFF1815 0.13 -2.0
682,731 + GFF1815 0.20 -0.1
682,731 + GFF1815 0.20 -0.3
682,731 + GFF1815 0.20 -0.0
682,732 - GFF1815 0.20 -0.6
683,037 + GFF1815 0.54 -0.4
683,037 + GFF1815 0.54 -0.5
683,038 - GFF1815 0.54 -0.2
683,038 - GFF1815 0.54 -0.1
683,143 - GFF1815 0.66 +0.9
683,143 - GFF1815 0.66 -0.1
683,143 - GFF1815 0.66 +0.0
683,143 - GFF1815 0.66 +0.2
683,143 - GFF1815 0.66 -0.0
683,143 - GFF1815 0.66 -0.4
683,143 - GFF1815 0.66 -0.2
683,143 - GFF1815 0.66 -0.5
683,160 + GFF1815 0.68 -0.1
683,161 - GFF1815 0.68 -0.3
683,161 - GFF1815 0.68 +0.4
683,361 + +0.2
683,361 + +0.2
683,362 - +0.3
683,362 - -0.2
683,394 + -0.3
683,394 + -0.1
683,394 + +1.3
683,395 - -2.4
683,603 + +0.1
683,603 + -0.2
683,603 + -0.1
683,603 + -0.2
683,604 - -0.4
683,604 - -0.3
683,792 + GFF1816 0.37 -0.4
683,792 + GFF1816 0.37 -1.5
683,792 + GFF1816 0.37 -0.3
683,793 - GFF1816 0.38 +0.1
683,793 - GFF1816 0.38 -0.1
683,793 - GFF1816 0.38 -0.0
683,793 - GFF1816 0.38 +1.0
683,795 + GFF1816 0.38 +2.1
683,796 - GFF1816 0.38 +0.2
684,000 - GFF1816 0.68 -0.1
684,056 + GFF1816 0.76 -0.5
684,167 + -0.1
684,167 + -0.1
684,168 - +0.0
684,319 + GFF1817 0.12 +0.4
684,319 + GFF1817 0.12 +0.9
684,319 + GFF1817 0.12 -0.3
684,319 + GFF1817 0.12 -0.3
684,320 - GFF1817 0.12 +0.1
684,320 - GFF1817 0.12 +0.1
684,320 - GFF1817 0.12 +0.4
684,374 - GFF1817 0.21 +0.8

Or see this region's nucleotide sequence