Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1801 and GFF1802 overlap by 4 nucleotides GFF1802 and GFF1803 are separated by 152 nucleotides GFF1803 and GFF1804 are separated by 91 nucleotides GFF1804 and GFF1805 are separated by 158 nucleotides
GFF1801 - Translation elongation factor Tu, at 669,601 to 670,755
GFF1801
GFF1802 - Translation elongation factor Tu, at 670,752 to 670,940
GFF1802
GFF1803 - Translation elongation factor G, at 671,093 to 673,195
GFF1803
GFF1804 - SSU ribosomal protein S7p (S5e), at 673,287 to 673,757
GFF1804
GFF1805 - SSU ribosomal protein S12p (S23e), at 673,916 to 674,293
GFF1805
Position (kb) 671
672
673
674 Strain fitness (log2 ratio) -2
-1
0
1 at 670.953 kb on - strand at 671.149 kb on - strand at 671.149 kb on - strand at 671.170 kb on - strand at 671.170 kb on - strand at 671.170 kb on - strand at 671.170 kb on - strand at 671.170 kb on - strand at 671.332 kb on - strand, within GFF1803 at 671.464 kb on - strand, within GFF1803 at 671.464 kb on - strand, within GFF1803 at 671.566 kb on - strand, within GFF1803 at 673.269 kb on - strand at 673.269 kb on - strand at 673.269 kb on - strand at 673.864 kb on - strand at 673.864 kb on - strand at 673.864 kb on - strand at 673.918 kb on - strand at 673.918 kb on - strand at 673.918 kb on - strand at 673.918 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 670,953 - -1.1 671,149 - -0.3 671,149 - +1.0 671,170 - -1.8 671,170 - -1.1 671,170 - -1.0 671,170 - +0.1 671,170 - +0.3 671,332 - GFF1803 0.11 -1.3 671,464 - GFF1803 0.18 -1.3 671,464 - GFF1803 0.18 -1.2 671,566 - GFF1803 0.22 -2.4 673,269 - +0.7 673,269 - +0.2 673,269 - -1.5 673,864 - -2.5 673,864 - -0.5 673,864 - -0.8 673,918 - +0.2 673,918 - -0.1 673,918 - -0.9 673,918 - -0.7
Or see this region's nucleotide sequence