Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1781 and GFF1782 are separated by 22 nucleotides GFF1782 and GFF1783 are separated by 71 nucleotides GFF1783 and GFF1784 are separated by 104 nucleotides
GFF1781 - TRAP-type C4-dicarboxylate transport system, large permease component, at 645,431 to 646,714
GFF1781
GFF1782 - TRAP-type C4-dicarboxylate transport system, small permease component, at 646,737 to 647,252
GFF1782
GFF1783 - TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein, at 647,324 to 648,310
GFF1783
GFF1784 - Aromatic hydrocarbon utilization transcriptional regulator CatR (LysR family), at 648,415 to 649,443
GFF1784
Position (kb) 647
648
649 Strain fitness (log2 ratio) -2
-1
0
1
2 at 646.327 kb on - strand, within GFF1781 at 646.606 kb on - strand at 646.802 kb on - strand, within GFF1782 at 646.802 kb on - strand, within GFF1782 at 646.802 kb on - strand, within GFF1782 at 646.864 kb on + strand, within GFF1782 at 646.864 kb on + strand, within GFF1782 at 646.865 kb on - strand, within GFF1782 at 646.865 kb on - strand, within GFF1782 at 646.865 kb on - strand, within GFF1782 at 646.924 kb on + strand, within GFF1782 at 646.924 kb on + strand, within GFF1782 at 646.924 kb on + strand, within GFF1782 at 646.925 kb on - strand, within GFF1782 at 646.925 kb on - strand, within GFF1782 at 646.925 kb on - strand, within GFF1782 at 646.925 kb on - strand, within GFF1782 at 646.939 kb on + strand, within GFF1782 at 646.939 kb on + strand, within GFF1782 at 646.939 kb on + strand, within GFF1782 at 646.940 kb on - strand, within GFF1782 at 647.364 kb on + strand at 647.365 kb on - strand at 647.376 kb on + strand at 647.376 kb on + strand at 647.376 kb on + strand at 647.376 kb on + strand at 647.377 kb on - strand at 647.377 kb on - strand at 647.377 kb on - strand at 647.377 kb on - strand at 647.385 kb on + strand at 647.385 kb on + strand at 647.385 kb on + strand at 647.386 kb on - strand at 647.386 kb on - strand at 647.386 kb on - strand at 647.604 kb on + strand, within GFF1783 at 647.604 kb on + strand, within GFF1783 at 647.604 kb on + strand, within GFF1783 at 647.604 kb on + strand, within GFF1783 at 647.605 kb on - strand, within GFF1783 at 647.605 kb on - strand, within GFF1783 at 647.605 kb on - strand, within GFF1783 at 647.605 kb on - strand, within GFF1783 at 647.605 kb on - strand, within GFF1783 at 648.008 kb on + strand, within GFF1783 at 648.183 kb on + strand, within GFF1783 at 648.183 kb on + strand, within GFF1783 at 648.183 kb on + strand, within GFF1783 at 648.183 kb on + strand, within GFF1783 at 648.183 kb on + strand, within GFF1783 at 648.184 kb on - strand, within GFF1783 at 648.184 kb on - strand, within GFF1783 at 648.184 kb on - strand, within GFF1783 at 648.184 kb on - strand, within GFF1783 at 648.184 kb on - strand, within GFF1783 at 648.207 kb on + strand, within GFF1783 at 648.329 kb on + strand at 648.329 kb on + strand at 648.329 kb on + strand at 648.329 kb on + strand at 648.329 kb on + strand at 648.329 kb on + strand at 648.329 kb on + strand at 648.330 kb on - strand at 648.330 kb on - strand at 648.330 kb on - strand at 648.330 kb on - strand at 648.330 kb on - strand at 648.330 kb on - strand at 648.330 kb on - strand at 648.330 kb on - strand at 648.330 kb on - strand at 648.330 kb on - strand at 648.330 kb on - strand at 648.330 kb on - strand at 648.330 kb on - strand at 648.355 kb on + strand at 648.355 kb on + strand at 648.355 kb on + strand at 648.355 kb on + strand at 648.355 kb on + strand at 648.355 kb on + strand at 648.355 kb on + strand at 648.356 kb on - strand at 648.356 kb on - strand at 648.356 kb on - strand at 648.356 kb on - strand at 648.356 kb on - strand at 648.356 kb on - strand at 648.356 kb on - strand at 648.356 kb on - strand at 648.356 kb on - strand at 648.401 kb on + strand at 648.401 kb on + strand at 648.401 kb on + strand at 648.439 kb on + strand at 648.439 kb on + strand at 648.439 kb on + strand at 648.439 kb on + strand at 648.607 kb on + strand, within GFF1784 at 648.607 kb on + strand, within GFF1784 at 648.607 kb on + strand, within GFF1784 at 648.607 kb on + strand, within GFF1784 at 648.607 kb on + strand, within GFF1784 at 648.607 kb on + strand, within GFF1784 at 648.607 kb on + strand, within GFF1784 at 648.608 kb on - strand, within GFF1784 at 648.608 kb on - strand, within GFF1784 at 648.608 kb on - strand, within GFF1784 at 648.608 kb on - strand, within GFF1784 at 648.608 kb on - strand, within GFF1784 at 648.610 kb on + strand, within GFF1784 at 648.610 kb on + strand, within GFF1784 at 648.610 kb on + strand, within GFF1784 at 648.610 kb on + strand, within GFF1784 at 648.610 kb on + strand, within GFF1784 at 648.610 kb on + strand, within GFF1784 at 648.610 kb on + strand, within GFF1784 at 648.610 kb on + strand, within GFF1784 at 648.611 kb on - strand, within GFF1784 at 648.611 kb on - strand, within GFF1784 at 648.611 kb on - strand, within GFF1784 at 648.611 kb on - strand, within GFF1784 at 648.611 kb on - strand, within GFF1784 at 648.611 kb on - strand, within GFF1784 at 648.611 kb on - strand, within GFF1784 at 648.611 kb on - strand, within GFF1784 at 648.611 kb on - strand, within GFF1784 at 648.611 kb on - strand, within GFF1784 at 648.611 kb on - strand, within GFF1784 at 648.611 kb on - strand, within GFF1784 at 648.948 kb on + strand, within GFF1784 at 649.024 kb on + strand, within GFF1784 at 649.025 kb on - strand, within GFF1784 at 649.025 kb on - strand, within GFF1784 at 649.025 kb on - strand, within GFF1784 at 649.042 kb on + strand, within GFF1784 at 649.042 kb on + strand, within GFF1784 at 649.042 kb on + strand, within GFF1784 at 649.043 kb on - strand, within GFF1784 at 649.043 kb on - strand, within GFF1784 at 649.043 kb on - strand, within GFF1784 at 649.081 kb on + strand, within GFF1784 at 649.081 kb on + strand, within GFF1784 at 649.082 kb on - strand, within GFF1784 at 649.183 kb on + strand, within GFF1784 at 649.183 kb on + strand, within GFF1784 at 649.183 kb on + strand, within GFF1784 at 649.184 kb on - strand, within GFF1784 at 649.184 kb on - strand, within GFF1784 at 649.184 kb on - strand, within GFF1784 at 649.184 kb on - strand, within GFF1784 at 649.184 kb on - strand, within GFF1784 at 649.231 kb on + strand, within GFF1784 at 649.232 kb on - strand, within GFF1784 at 649.232 kb on - strand, within GFF1784 at 649.232 kb on - strand, within GFF1784 at 649.232 kb on - strand, within GFF1784 at 649.232 kb on - strand, within GFF1784
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 646,327 - GFF1781 0.70 -0.3 646,606 - +0.7 646,802 - GFF1782 0.13 +0.2 646,802 - GFF1782 0.13 +0.6 646,802 - GFF1782 0.13 +0.2 646,864 + GFF1782 0.25 -0.0 646,864 + GFF1782 0.25 +0.4 646,865 - GFF1782 0.25 -0.0 646,865 - GFF1782 0.25 -0.5 646,865 - GFF1782 0.25 +0.7 646,924 + GFF1782 0.36 +0.4 646,924 + GFF1782 0.36 +0.2 646,924 + GFF1782 0.36 -0.2 646,925 - GFF1782 0.36 +0.1 646,925 - GFF1782 0.36 -0.1 646,925 - GFF1782 0.36 -0.1 646,925 - GFF1782 0.36 +0.2 646,939 + GFF1782 0.39 +0.2 646,939 + GFF1782 0.39 +1.2 646,939 + GFF1782 0.39 +1.1 646,940 - GFF1782 0.39 -0.5 647,364 + +0.6 647,365 - -0.4 647,376 + -0.2 647,376 + -0.1 647,376 + +0.4 647,376 + -0.5 647,377 - -0.1 647,377 - -0.2 647,377 - +0.4 647,377 - -0.0 647,385 + -0.1 647,385 + -0.8 647,385 + -1.0 647,386 - -0.6 647,386 - +0.6 647,386 - -0.2 647,604 + GFF1783 0.28 +0.9 647,604 + GFF1783 0.28 -0.1 647,604 + GFF1783 0.28 -0.3 647,604 + GFF1783 0.28 +0.6 647,605 - GFF1783 0.28 -0.5 647,605 - GFF1783 0.28 -2.3 647,605 - GFF1783 0.28 -0.3 647,605 - GFF1783 0.28 -1.5 647,605 - GFF1783 0.28 -0.6 648,008 + GFF1783 0.69 +0.7 648,183 + GFF1783 0.87 -0.4 648,183 + GFF1783 0.87 +0.3 648,183 + GFF1783 0.87 -0.3 648,183 + GFF1783 0.87 +1.2 648,183 + GFF1783 0.87 +0.1 648,184 - GFF1783 0.87 -0.1 648,184 - GFF1783 0.87 -1.3 648,184 - GFF1783 0.87 -2.2 648,184 - GFF1783 0.87 -0.3 648,184 - GFF1783 0.87 -0.3 648,207 + GFF1783 0.89 +2.0 648,329 + -0.2 648,329 + -0.1 648,329 + -1.4 648,329 + +0.0 648,329 + -1.5 648,329 + -0.9 648,329 + -0.1 648,330 - +0.2 648,330 - +0.6 648,330 - +1.2 648,330 - -1.8 648,330 - -0.2 648,330 - -0.7 648,330 - +1.3 648,330 - +0.0 648,330 - -0.1 648,330 - -0.3 648,330 - +0.7 648,330 - +2.0 648,330 - +1.1 648,355 + -0.6 648,355 + +0.4 648,355 + -0.2 648,355 + -0.3 648,355 + +0.2 648,355 + -0.5 648,355 + -0.1 648,356 - +0.2 648,356 - +0.2 648,356 - -0.4 648,356 - -0.2 648,356 - +0.4 648,356 - +1.0 648,356 - +0.0 648,356 - -0.4 648,356 - -0.1 648,401 + +0.3 648,401 + +0.7 648,401 + -0.3 648,439 + +0.2 648,439 + -0.2 648,439 + +0.2 648,439 + +0.1 648,607 + GFF1784 0.19 -0.2 648,607 + GFF1784 0.19 -0.4 648,607 + GFF1784 0.19 +0.0 648,607 + GFF1784 0.19 +0.4 648,607 + GFF1784 0.19 -0.4 648,607 + GFF1784 0.19 -0.1 648,607 + GFF1784 0.19 -0.9 648,608 - GFF1784 0.19 +0.0 648,608 - GFF1784 0.19 -0.1 648,608 - GFF1784 0.19 +0.1 648,608 - GFF1784 0.19 -0.3 648,608 - GFF1784 0.19 -0.2 648,610 + GFF1784 0.19 +0.2 648,610 + GFF1784 0.19 -0.2 648,610 + GFF1784 0.19 +0.6 648,610 + GFF1784 0.19 +0.7 648,610 + GFF1784 0.19 +0.6 648,610 + GFF1784 0.19 +0.8 648,610 + GFF1784 0.19 -0.2 648,610 + GFF1784 0.19 +0.5 648,611 - GFF1784 0.19 +0.0 648,611 - GFF1784 0.19 +0.2 648,611 - GFF1784 0.19 +0.3 648,611 - GFF1784 0.19 +1.0 648,611 - GFF1784 0.19 +0.5 648,611 - GFF1784 0.19 -0.0 648,611 - GFF1784 0.19 -0.1 648,611 - GFF1784 0.19 +0.1 648,611 - GFF1784 0.19 +1.3 648,611 - GFF1784 0.19 -0.4 648,611 - GFF1784 0.19 +0.7 648,611 - GFF1784 0.19 -0.0 648,948 + GFF1784 0.52 +0.4 649,024 + GFF1784 0.59 -0.2 649,025 - GFF1784 0.59 -0.2 649,025 - GFF1784 0.59 -1.4 649,025 - GFF1784 0.59 +0.0 649,042 + GFF1784 0.61 +0.8 649,042 + GFF1784 0.61 +0.4 649,042 + GFF1784 0.61 -0.2 649,043 - GFF1784 0.61 -0.1 649,043 - GFF1784 0.61 -0.6 649,043 - GFF1784 0.61 -0.5 649,081 + GFF1784 0.65 +0.2 649,081 + GFF1784 0.65 +0.3 649,082 - GFF1784 0.65 +0.1 649,183 + GFF1784 0.75 +0.1 649,183 + GFF1784 0.75 -0.2 649,183 + GFF1784 0.75 +0.1 649,184 - GFF1784 0.75 -0.7 649,184 - GFF1784 0.75 +1.1 649,184 - GFF1784 0.75 -0.5 649,184 - GFF1784 0.75 +0.9 649,184 - GFF1784 0.75 -0.4 649,231 + GFF1784 0.79 -0.2 649,232 - GFF1784 0.79 -0.4 649,232 - GFF1784 0.79 +0.5 649,232 - GFF1784 0.79 +0.2 649,232 - GFF1784 0.79 -0.5 649,232 - GFF1784 0.79 -0.4
Or see this region's nucleotide sequence