Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1736 and GFF1737 are separated by 41 nucleotides GFF1737 and GFF1738 are separated by 61 nucleotides
GFF1736 - Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14), at 590,789 to 591,757
GFF1736
GFF1737 - Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE, at 591,799 to 593,634
GFF1737
GFF1738 - Magnesium and cobalt efflux protein CorC, at 593,696 to 594,562
GFF1738
Position (kb) 591
592
593
594 Strain fitness (log2 ratio) -1
0
1
2 at 591.788 kb on + strand at 591.788 kb on + strand at 591.921 kb on - strand at 592.379 kb on + strand, within GFF1737 at 592.466 kb on + strand, within GFF1737 at 592.993 kb on + strand, within GFF1737 at 592.993 kb on + strand, within GFF1737 at 592.993 kb on + strand, within GFF1737 at 592.994 kb on - strand, within GFF1737 at 592.994 kb on - strand, within GFF1737 at 592.994 kb on - strand, within GFF1737 at 593.267 kb on + strand, within GFF1737 at 593.267 kb on + strand, within GFF1737 at 593.270 kb on + strand, within GFF1737 at 593.270 kb on + strand, within GFF1737 at 593.336 kb on + strand, within GFF1737 at 593.435 kb on + strand, within GFF1737 at 593.435 kb on + strand, within GFF1737 at 593.435 kb on + strand, within GFF1737 at 593.436 kb on - strand, within GFF1737 at 593.687 kb on + strand at 593.687 kb on + strand at 593.687 kb on + strand at 593.687 kb on + strand at 593.687 kb on + strand at 593.688 kb on - strand at 593.688 kb on - strand at 593.688 kb on - strand at 593.688 kb on - strand at 594.541 kb on + strand at 594.582 kb on + strand at 594.582 kb on + strand at 594.583 kb on - strand at 594.598 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 591,788 + -0.5 591,788 + -0.1 591,921 - +0.2 592,379 + GFF1737 0.32 -1.1 592,466 + GFF1737 0.36 -1.1 592,993 + GFF1737 0.65 +0.1 592,993 + GFF1737 0.65 -0.8 592,993 + GFF1737 0.65 -0.2 592,994 - GFF1737 0.65 +0.9 592,994 - GFF1737 0.65 -1.3 592,994 - GFF1737 0.65 -0.8 593,267 + GFF1737 0.80 -0.3 593,267 + GFF1737 0.80 +0.4 593,270 + GFF1737 0.80 -0.8 593,270 + GFF1737 0.80 -0.8 593,336 + GFF1737 0.84 -0.5 593,435 + GFF1737 0.89 -0.7 593,435 + GFF1737 0.89 -0.7 593,435 + GFF1737 0.89 -0.8 593,436 - GFF1737 0.89 -1.1 593,687 + -0.4 593,687 + -1.6 593,687 + +1.0 593,687 + -0.5 593,687 + -0.4 593,688 - +0.9 593,688 - +0.0 593,688 - +0.2 593,688 - -0.5 594,541 + -0.5 594,582 + -0.1 594,582 + +1.8 594,583 - -0.0 594,598 + -0.1
Or see this region's nucleotide sequence