Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF168 and GFF169 are separated by 65 nucleotides GFF169 and GFF170 are separated by 13 nucleotides GFF170 and GFF171 are separated by 1 nucleotides GFF171 and GFF172 are separated by 57 nucleotides
GFF168 - Bll6585 protein, at 182,317 to 184,329
GFF168
GFF169 - Outer membrane protein romA, at 184,395 to 185,516
GFF169
GFF170 - DNA-3-methyladenine glycosylase (EC 3.2.2.20), at 185,530 to 186,135
GFF170
GFF171 - hypothetical protein, at 186,137 to 186,436
GFF171
GFF172 - Transcriptional regulator, GntR family, at 186,494 to 187,144
GFF172
Position (kb) 184
185
186 Strain fitness (log2 ratio) -1
0
1 at 183.521 kb on + strand, within GFF168 at 183.521 kb on + strand, within GFF168 at 183.521 kb on + strand, within GFF168 at 183.522 kb on - strand, within GFF168 at 183.525 kb on - strand, within GFF168 at 183.563 kb on + strand, within GFF168 at 183.989 kb on + strand, within GFF168 at 183.989 kb on + strand, within GFF168 at 184.169 kb on + strand at 184.169 kb on + strand at 184.169 kb on + strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.170 kb on - strand at 184.175 kb on + strand at 184.175 kb on + strand at 184.175 kb on + strand at 184.332 kb on + strand at 184.333 kb on - strand at 184.333 kb on - strand at 184.333 kb on - strand at 184.540 kb on - strand, within GFF169 at 184.821 kb on + strand, within GFF169 at 184.822 kb on - strand, within GFF169 at 185.128 kb on - strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.209 kb on + strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.210 kb on - strand, within GFF169 at 185.605 kb on + strand, within GFF170 at 186.324 kb on + strand, within GFF171 at 186.324 kb on + strand, within GFF171 at 186.327 kb on + strand, within GFF171 at 186.328 kb on - strand, within GFF171 at 186.429 kb on + strand at 186.429 kb on + strand at 186.429 kb on + strand at 186.430 kb on - strand at 186.430 kb on - strand at 186.441 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 183,521 + GFF168 0.60 +0.5 183,521 + GFF168 0.60 -0.9 183,521 + GFF168 0.60 +0.1 183,522 - GFF168 0.60 -0.4 183,525 - GFF168 0.60 +0.0 183,563 + GFF168 0.62 +0.4 183,989 + GFF168 0.83 -0.2 183,989 + GFF168 0.83 +1.1 184,169 + +0.0 184,169 + -0.0 184,169 + +0.1 184,170 - -0.3 184,170 - -0.5 184,170 - +0.3 184,170 - +0.1 184,170 - -0.0 184,170 - +0.4 184,170 - -0.4 184,170 - +0.3 184,170 - -0.0 184,170 - +0.5 184,175 + +0.5 184,175 + +0.2 184,175 + +0.5 184,332 + +0.7 184,333 - +0.2 184,333 - -1.5 184,333 - -0.1 184,540 - GFF169 0.13 +0.2 184,821 + GFF169 0.38 +0.5 184,822 - GFF169 0.38 +0.4 185,128 - GFF169 0.65 -0.1 185,209 + GFF169 0.73 -0.3 185,209 + GFF169 0.73 +1.2 185,209 + GFF169 0.73 +0.0 185,209 + GFF169 0.73 +0.0 185,209 + GFF169 0.73 -0.4 185,209 + GFF169 0.73 -0.9 185,209 + GFF169 0.73 +0.6 185,209 + GFF169 0.73 -0.4 185,209 + GFF169 0.73 -0.6 185,209 + GFF169 0.73 +0.1 185,210 - GFF169 0.73 +0.8 185,210 - GFF169 0.73 -1.3 185,210 - GFF169 0.73 +0.3 185,210 - GFF169 0.73 -0.6 185,210 - GFF169 0.73 -0.2 185,210 - GFF169 0.73 +0.9 185,210 - GFF169 0.73 +0.6 185,605 + GFF170 0.12 -0.0 186,324 + GFF171 0.62 -0.3 186,324 + GFF171 0.62 -0.7 186,327 + GFF171 0.63 +0.0 186,328 - GFF171 0.64 -0.1 186,429 + -0.1 186,429 + -0.3 186,429 + -0.4 186,430 - -0.0 186,430 - -0.4 186,441 + -0.1
Or see this region's nucleotide sequence