Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1608

Experiment: Ying_AminoAcid20 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1607 and GFF1608 are separated by 62 nucleotidesGFF1608 and GFF1609 are separated by 37 nucleotidesGFF1609 and GFF1610 are separated by 26 nucleotides GFF1607 - putative cyclase, at 462,291 to 463,271 GFF1607 GFF1608 - Transcriptional regulator, TetR family, at 463,334 to 463,951 GFF1608 GFF1609 - Regulator of competence-specific genes, at 463,989 to 464,345 GFF1609 GFF1610 - hypothetical protein, at 464,372 to 464,878 GFF1610 Position (kb) 463 464Strain fitness (log2 ratio) -2 -1 0 1at 462.409 kb on + strand, within GFF1607at 462.409 kb on + strand, within GFF1607at 462.409 kb on + strand, within GFF1607at 462.409 kb on + strand, within GFF1607at 462.410 kb on - strand, within GFF1607at 462.410 kb on - strand, within GFF1607at 462.410 kb on - strand, within GFF1607at 462.410 kb on - strand, within GFF1607at 462.539 kb on - strand, within GFF1607at 462.539 kb on - strand, within GFF1607at 462.539 kb on - strand, within GFF1607at 462.670 kb on + strand, within GFF1607at 462.671 kb on - strand, within GFF1607at 462.671 kb on - strand, within GFF1607at 462.685 kb on + strand, within GFF1607at 462.686 kb on - strand, within GFF1607at 462.955 kb on + strand, within GFF1607at 462.955 kb on + strand, within GFF1607at 462.955 kb on + strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 462.956 kb on - strand, within GFF1607at 463.000 kb on + strand, within GFF1607at 463.000 kb on + strand, within GFF1607at 463.000 kb on + strand, within GFF1607at 463.001 kb on - strand, within GFF1607at 463.001 kb on - strand, within GFF1607at 463.001 kb on - strand, within GFF1607at 463.001 kb on - strand, within GFF1607at 463.034 kb on - strand, within GFF1607at 463.034 kb on - strand, within GFF1607at 463.034 kb on - strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.051 kb on + strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.052 kb on - strand, within GFF1607at 463.065 kb on - strand, within GFF1607at 463.189 kb on + strandat 463.189 kb on + strandat 463.189 kb on + strandat 463.190 kb on - strandat 463.190 kb on - strandat 463.330 kb on + strandat 463.407 kb on + strand, within GFF1608at 463.407 kb on + strand, within GFF1608at 463.408 kb on - strand, within GFF1608at 463.408 kb on - strand, within GFF1608at 463.408 kb on - strand, within GFF1608at 463.797 kb on + strand, within GFF1608at 463.798 kb on - strand, within GFF1608at 463.798 kb on - strand, within GFF1608at 463.801 kb on - strand, within GFF1608at 463.801 kb on - strand, within GFF1608at 463.807 kb on - strand, within GFF1608at 463.807 kb on - strand, within GFF1608at 463.807 kb on - strand, within GFF1608at 463.807 kb on - strand, within GFF1608at 463.807 kb on - strand, within GFF1608at 463.977 kb on + strandat 463.977 kb on + strandat 464.229 kb on + strand, within GFF1609at 464.230 kb on - strand, within GFF1609at 464.230 kb on - strand, within GFF1609at 464.230 kb on - strand, within GFF1609at 464.343 kb on + strandat 464.343 kb on + strandat 464.344 kb on - strandat 464.430 kb on + strand, within GFF1610

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1
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462,409 + GFF1607 0.12 -1.5
462,409 + GFF1607 0.12 +0.4
462,409 + GFF1607 0.12 +0.4
462,409 + GFF1607 0.12 -0.1
462,410 - GFF1607 0.12 -0.3
462,410 - GFF1607 0.12 -0.5
462,410 - GFF1607 0.12 +0.2
462,410 - GFF1607 0.12 -0.2
462,539 - GFF1607 0.25 -0.1
462,539 - GFF1607 0.25 -0.8
462,539 - GFF1607 0.25 +0.2
462,670 + GFF1607 0.39 -0.4
462,671 - GFF1607 0.39 -0.5
462,671 - GFF1607 0.39 -0.5
462,685 + GFF1607 0.40 +0.1
462,686 - GFF1607 0.40 -0.3
462,955 + GFF1607 0.68 +0.1
462,955 + GFF1607 0.68 +0.8
462,955 + GFF1607 0.68 +0.1
462,956 - GFF1607 0.68 +0.1
462,956 - GFF1607 0.68 -1.1
462,956 - GFF1607 0.68 -0.4
462,956 - GFF1607 0.68 -0.7
462,956 - GFF1607 0.68 +0.5
462,956 - GFF1607 0.68 -0.5
462,956 - GFF1607 0.68 -0.5
463,000 + GFF1607 0.72 -0.1
463,000 + GFF1607 0.72 +0.4
463,000 + GFF1607 0.72 -0.1
463,001 - GFF1607 0.72 -0.5
463,001 - GFF1607 0.72 -0.6
463,001 - GFF1607 0.72 +0.0
463,001 - GFF1607 0.72 -0.1
463,034 - GFF1607 0.76 +0.1
463,034 - GFF1607 0.76 -0.1
463,034 - GFF1607 0.76 -0.4
463,051 + GFF1607 0.77 -0.5
463,051 + GFF1607 0.77 -0.6
463,051 + GFF1607 0.77 -0.1
463,051 + GFF1607 0.77 -0.3
463,051 + GFF1607 0.77 -0.8
463,051 + GFF1607 0.77 +0.6
463,051 + GFF1607 0.77 -0.2
463,052 - GFF1607 0.78 -0.9
463,052 - GFF1607 0.78 -1.8
463,052 - GFF1607 0.78 +1.3
463,052 - GFF1607 0.78 -0.1
463,052 - GFF1607 0.78 -0.2
463,052 - GFF1607 0.78 -0.3
463,052 - GFF1607 0.78 -0.4
463,065 - GFF1607 0.79 -0.2
463,189 + -0.4
463,189 + +0.7
463,189 + +0.4
463,190 - +0.4
463,190 - +0.5
463,330 + +1.1
463,407 + GFF1608 0.12 -0.6
463,407 + GFF1608 0.12 -0.7
463,408 - GFF1608 0.12 -0.6
463,408 - GFF1608 0.12 +0.6
463,408 - GFF1608 0.12 -1.8
463,797 + GFF1608 0.75 +0.2
463,798 - GFF1608 0.75 -0.3
463,798 - GFF1608 0.75 -0.2
463,801 - GFF1608 0.76 -0.3
463,801 - GFF1608 0.76 +0.1
463,807 - GFF1608 0.77 +0.4
463,807 - GFF1608 0.77 +0.0
463,807 - GFF1608 0.77 +0.5
463,807 - GFF1608 0.77 +0.1
463,807 - GFF1608 0.77 -0.4
463,977 + -1.3
463,977 + +0.1
464,229 + GFF1609 0.67 -0.1
464,230 - GFF1609 0.68 +0.5
464,230 - GFF1609 0.68 +1.2
464,230 - GFF1609 0.68 +0.1
464,343 + +0.1
464,343 + +0.2
464,344 - -0.1
464,430 + GFF1610 0.11 -0.4

Or see this region's nucleotide sequence