Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF149 and GFF150 are separated by 23 nucleotides GFF150 and GFF151 are separated by 715 nucleotides GFF151 and GFF152 are separated by 50 nucleotides GFF152 and GFF153 are separated by 0 nucleotides
GFF149 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 164,698 to 165,960
GFF149
GFF150 - hypothetical protein, at 165,984 to 166,142
GFF150
GFF151 - Short-chain dehydrogenase/reductase SDR, at 166,858 to 167,691
GFF151
GFF152 - hypothetical protein, at 167,742 to 168,389
GFF152
GFF153 - Lactoylglutathione lyase (EC 4.4.1.5), at 168,390 to 168,701
GFF153
GFF154 - Lactoylglutathione lyase (EC 4.4.1.5), at 168,671 to 168,826
GFF154
Position (kb) 166
167
168 Strain fitness (log2 ratio) -1
0
1 at 165.865 kb on + strand at 165.866 kb on - strand at 165.866 kb on - strand at 165.866 kb on - strand at 165.961 kb on + strand at 165.962 kb on - strand at 165.962 kb on - strand at 165.962 kb on - strand at 166.024 kb on + strand, within GFF150 at 166.111 kb on + strand, within GFF150 at 166.111 kb on + strand, within GFF150 at 166.495 kb on + strand at 166.496 kb on - strand at 166.496 kb on - strand at 166.881 kb on - strand at 166.884 kb on - strand at 167.362 kb on + strand, within GFF151 at 167.362 kb on + strand, within GFF151 at 167.363 kb on - strand, within GFF151 at 167.524 kb on + strand, within GFF151 at 167.534 kb on - strand, within GFF151 at 167.645 kb on - strand at 168.042 kb on + strand, within GFF152 at 168.043 kb on - strand, within GFF152 at 168.173 kb on + strand, within GFF152 at 168.388 kb on - strand at 168.388 kb on - strand at 168.475 kb on + strand, within GFF153 at 168.475 kb on + strand, within GFF153 at 168.476 kb on - strand, within GFF153 at 168.476 kb on - strand, within GFF153
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 165,865 + +0.2 165,866 - +0.4 165,866 - -0.4 165,866 - -0.2 165,961 + -0.5 165,962 - -0.2 165,962 - -0.1 165,962 - -0.4 166,024 + GFF150 0.25 +0.2 166,111 + GFF150 0.80 +0.1 166,111 + GFF150 0.80 +0.6 166,495 + +1.2 166,496 - -0.2 166,496 - +0.3 166,881 - -0.2 166,884 - -0.8 167,362 + GFF151 0.60 +0.1 167,362 + GFF151 0.60 -0.4 167,363 - GFF151 0.61 -1.0 167,524 + GFF151 0.80 +0.4 167,534 - GFF151 0.81 -0.2 167,645 - -0.1 168,042 + GFF152 0.46 +0.5 168,043 - GFF152 0.46 +0.6 168,173 + GFF152 0.67 -0.2 168,388 - -1.2 168,388 - -0.6 168,475 + GFF153 0.27 +0.0 168,475 + GFF153 0.27 +0.7 168,476 - GFF153 0.28 +0.0 168,476 - GFF153 0.28 +0.4
Or see this region's nucleotide sequence