Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1387 and GFF1388 are separated by 2 nucleotides GFF1388 and GFF1389 overlap by 4 nucleotides GFF1389 and GFF1390 are separated by 45 nucleotides
GFF1387 - General secretion pathway protein L, at 241,217 to 242,524
GFF1387
GFF1388 - General secretion pathway protein M, at 242,527 to 243,060
GFF1388
GFF1389 - General secretion pathway protein N, at 243,057 to 243,854
GFF1389
GFF1390 - General secretion pathway protein D, at 243,900 to 246,104
GFF1390
Position (kb) 243
244 Strain fitness (log2 ratio) -2
-1
0
1 at 242.384 kb on + strand, within GFF1387 at 242.385 kb on - strand, within GFF1387 at 242.385 kb on - strand, within GFF1387 at 242.385 kb on - strand, within GFF1387 at 243.630 kb on + strand, within GFF1389 at 243.631 kb on - strand, within GFF1389 at 243.888 kb on + strand at 243.888 kb on + strand at 243.889 kb on - strand at 243.889 kb on - strand at 243.889 kb on - strand at 243.889 kb on - strand at 244.249 kb on - strand, within GFF1390 at 244.249 kb on - strand, within GFF1390 at 244.249 kb on - strand, within GFF1390 at 244.465 kb on - strand, within GFF1390 at 244.635 kb on + strand, within GFF1390 at 244.635 kb on + strand, within GFF1390 at 244.636 kb on - strand, within GFF1390 at 244.636 kb on - strand, within GFF1390 at 244.636 kb on - strand, within GFF1390 at 244.636 kb on - strand, within GFF1390 at 244.636 kb on - strand, within GFF1390 at 244.782 kb on + strand, within GFF1390 at 244.783 kb on - strand, within GFF1390
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 242,384 + GFF1387 0.89 +0.4 242,385 - GFF1387 0.89 -0.3 242,385 - GFF1387 0.89 +0.7 242,385 - GFF1387 0.89 +0.3 243,630 + GFF1389 0.72 +1.2 243,631 - GFF1389 0.72 -2.7 243,888 + +0.1 243,888 + -0.7 243,889 - +0.4 243,889 - +0.5 243,889 - +0.3 243,889 - +0.6 244,249 - GFF1390 0.16 -0.3 244,249 - GFF1390 0.16 -1.8 244,249 - GFF1390 0.16 +0.5 244,465 - GFF1390 0.26 -0.2 244,635 + GFF1390 0.33 -0.6 244,635 + GFF1390 0.33 -0.3 244,636 - GFF1390 0.33 +0.2 244,636 - GFF1390 0.33 +0.3 244,636 - GFF1390 0.33 +0.3 244,636 - GFF1390 0.33 -0.7 244,636 - GFF1390 0.33 -0.1 244,782 + GFF1390 0.40 +0.1 244,783 - GFF1390 0.40 -1.0
Or see this region's nucleotide sequence