Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1371 and GFF1372 overlap by 147 nucleotides GFF1372 and GFF1373 are separated by 81 nucleotides GFF1373 and GFF1374 are separated by 446 nucleotides GFF1374 and GFF1375 are separated by 77 nucleotides
GFF1371 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 227,744 to 229,315
GFF1371
GFF1372 - hypothetical protein, at 229,169 to 229,333
GFF1372
GFF1373 - hypothetical protein, at 229,415 to 229,948
GFF1373
GFF1374 - Flagellar hook-length control protein FliK, at 230,395 to 230,715
GFF1374
GFF1375 - Outer membrane protein (porin), at 230,793 to 231,779
GFF1375
Position (kb) 229
230 Strain fitness (log2 ratio) -1
0
1
2 at 228.651 kb on + strand, within GFF1371 at 228.651 kb on + strand, within GFF1371 at 228.651 kb on + strand, within GFF1371 at 228.651 kb on + strand, within GFF1371 at 228.652 kb on - strand, within GFF1371 at 228.652 kb on - strand, within GFF1371 at 228.652 kb on - strand, within GFF1371 at 228.957 kb on + strand, within GFF1371 at 228.957 kb on + strand, within GFF1371 at 228.957 kb on + strand, within GFF1371 at 228.957 kb on + strand, within GFF1371 at 228.957 kb on + strand, within GFF1371 at 228.958 kb on - strand, within GFF1371 at 228.958 kb on - strand, within GFF1371 at 228.958 kb on - strand, within GFF1371 at 228.958 kb on - strand, within GFF1371 at 228.958 kb on - strand, within GFF1371 at 228.958 kb on - strand, within GFF1371 at 228.958 kb on - strand, within GFF1371 at 228.958 kb on - strand, within GFF1371 at 228.958 kb on - strand, within GFF1371 at 228.958 kb on - strand, within GFF1371 at 228.958 kb on - strand, within GFF1371 at 229.140 kb on + strand, within GFF1371 at 229.140 kb on + strand, within GFF1371 at 229.140 kb on + strand, within GFF1371 at 229.140 kb on + strand, within GFF1371 at 229.141 kb on - strand, within GFF1371 at 229.141 kb on - strand, within GFF1371 at 229.141 kb on - strand, within GFF1371 at 229.143 kb on + strand, within GFF1371 at 229.143 kb on + strand, within GFF1371 at 229.143 kb on + strand, within GFF1371 at 229.144 kb on - strand, within GFF1371 at 229.158 kb on + strand at 229.158 kb on + strand at 229.158 kb on + strand at 229.158 kb on + strand at 229.158 kb on + strand at 229.159 kb on - strand at 229.327 kb on + strand at 229.327 kb on + strand at 229.327 kb on + strand at 229.327 kb on + strand at 229.328 kb on - strand at 229.328 kb on - strand at 229.328 kb on - strand at 229.328 kb on - strand at 229.332 kb on - strand at 229.332 kb on - strand at 229.332 kb on - strand at 229.351 kb on + strand at 229.351 kb on + strand at 229.351 kb on + strand at 229.351 kb on + strand at 229.351 kb on + strand at 229.351 kb on + strand at 229.351 kb on + strand at 229.352 kb on - strand at 229.352 kb on - strand at 229.352 kb on - strand at 229.352 kb on - strand at 229.352 kb on - strand at 229.449 kb on + strand at 229.449 kb on + strand at 229.449 kb on + strand at 229.450 kb on - strand at 229.450 kb on - strand at 229.450 kb on - strand at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.680 kb on + strand, within GFF1373 at 229.681 kb on - strand, within GFF1373 at 229.681 kb on - strand, within GFF1373 at 229.681 kb on - strand, within GFF1373 at 229.681 kb on - strand, within GFF1373 at 229.681 kb on - strand, within GFF1373 at 229.681 kb on - strand, within GFF1373 at 229.681 kb on - strand, within GFF1373 at 229.695 kb on + strand, within GFF1373 at 229.695 kb on + strand, within GFF1373 at 229.695 kb on + strand, within GFF1373 at 229.696 kb on - strand, within GFF1373 at 229.696 kb on - strand, within GFF1373 at 229.696 kb on - strand, within GFF1373 at 229.989 kb on + strand at 230.585 kb on + strand, within GFF1374 at 230.653 kb on + strand, within GFF1374 at 230.653 kb on + strand, within GFF1374 at 230.653 kb on + strand, within GFF1374 at 230.653 kb on + strand, within GFF1374 at 230.653 kb on + strand, within GFF1374 at 230.653 kb on + strand, within GFF1374 at 230.653 kb on + strand, within GFF1374 at 230.653 kb on + strand, within GFF1374 at 230.653 kb on + strand, within GFF1374 at 230.653 kb on + strand, within GFF1374 at 230.654 kb on - strand, within GFF1374 at 230.654 kb on - strand, within GFF1374 at 230.654 kb on - strand, within GFF1374 at 230.654 kb on - strand, within GFF1374 at 230.654 kb on - strand, within GFF1374 at 230.654 kb on - strand, within GFF1374 at 230.654 kb on - strand, within GFF1374 at 230.654 kb on - strand, within GFF1374 at 230.654 kb on - strand, within GFF1374 at 230.654 kb on - strand, within GFF1374 at 230.654 kb on - strand, within GFF1374 at 230.654 kb on - strand, within GFF1374 at 230.654 kb on - strand, within GFF1374
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 228,651 + GFF1371 0.58 -0.2 228,651 + GFF1371 0.58 -0.2 228,651 + GFF1371 0.58 +0.5 228,651 + GFF1371 0.58 +0.5 228,652 - GFF1371 0.58 +0.3 228,652 - GFF1371 0.58 +0.2 228,652 - GFF1371 0.58 -0.5 228,957 + GFF1371 0.77 +0.2 228,957 + GFF1371 0.77 +0.2 228,957 + GFF1371 0.77 +0.1 228,957 + GFF1371 0.77 +0.3 228,957 + GFF1371 0.77 +0.6 228,958 - GFF1371 0.77 +0.6 228,958 - GFF1371 0.77 -0.6 228,958 - GFF1371 0.77 +0.0 228,958 - GFF1371 0.77 -0.8 228,958 - GFF1371 0.77 +0.2 228,958 - GFF1371 0.77 -0.2 228,958 - GFF1371 0.77 -0.1 228,958 - GFF1371 0.77 -0.3 228,958 - GFF1371 0.77 +0.0 228,958 - GFF1371 0.77 -0.2 228,958 - GFF1371 0.77 +0.2 229,140 + GFF1371 0.89 -0.0 229,140 + GFF1371 0.89 +0.1 229,140 + GFF1371 0.89 -0.1 229,140 + GFF1371 0.89 -0.7 229,141 - GFF1371 0.89 +2.1 229,141 - GFF1371 0.89 -0.6 229,141 - GFF1371 0.89 +1.0 229,143 + GFF1371 0.89 +0.0 229,143 + GFF1371 0.89 +0.8 229,143 + GFF1371 0.89 +0.6 229,144 - GFF1371 0.89 +0.6 229,158 + +1.2 229,158 + -1.5 229,158 + -0.0 229,158 + -0.5 229,158 + +0.5 229,159 - +1.2 229,327 + +0.8 229,327 + +0.9 229,327 + -0.1 229,327 + +0.3 229,328 - +0.3 229,328 - +0.5 229,328 - +0.1 229,328 - +1.2 229,332 - -0.3 229,332 - -0.7 229,332 - -0.2 229,351 + -0.3 229,351 + -0.3 229,351 + -0.1 229,351 + -0.2 229,351 + +0.6 229,351 + -0.0 229,351 + -0.1 229,352 - +0.1 229,352 - -0.0 229,352 - +1.9 229,352 - +0.1 229,352 - -0.0 229,449 + -0.1 229,449 + +0.3 229,449 + -0.4 229,450 - -0.3 229,450 - -1.3 229,450 - +0.6 229,680 + GFF1373 0.50 +1.5 229,680 + GFF1373 0.50 +0.6 229,680 + GFF1373 0.50 +1.1 229,680 + GFF1373 0.50 +0.4 229,680 + GFF1373 0.50 +0.1 229,680 + GFF1373 0.50 +0.1 229,680 + GFF1373 0.50 -0.4 229,680 + GFF1373 0.50 +0.2 229,680 + GFF1373 0.50 -1.3 229,680 + GFF1373 0.50 -0.5 229,680 + GFF1373 0.50 +0.2 229,680 + GFF1373 0.50 +0.3 229,680 + GFF1373 0.50 +0.6 229,680 + GFF1373 0.50 -1.2 229,680 + GFF1373 0.50 +0.1 229,680 + GFF1373 0.50 -0.1 229,680 + GFF1373 0.50 +0.4 229,681 - GFF1373 0.50 -0.3 229,681 - GFF1373 0.50 +1.2 229,681 - GFF1373 0.50 -0.3 229,681 - GFF1373 0.50 +1.1 229,681 - GFF1373 0.50 +0.1 229,681 - GFF1373 0.50 -0.4 229,681 - GFF1373 0.50 +0.2 229,695 + GFF1373 0.52 -0.9 229,695 + GFF1373 0.52 -0.0 229,695 + GFF1373 0.52 +0.6 229,696 - GFF1373 0.53 -0.6 229,696 - GFF1373 0.53 +0.6 229,696 - GFF1373 0.53 -0.1 229,989 + -0.3 230,585 + GFF1374 0.59 +1.8 230,653 + GFF1374 0.80 -0.1 230,653 + GFF1374 0.80 +0.4 230,653 + GFF1374 0.80 +0.3 230,653 + GFF1374 0.80 -0.4 230,653 + GFF1374 0.80 -0.1 230,653 + GFF1374 0.80 +0.7 230,653 + GFF1374 0.80 -0.4 230,653 + GFF1374 0.80 +0.2 230,653 + GFF1374 0.80 -0.9 230,653 + GFF1374 0.80 -1.0 230,654 - GFF1374 0.81 +0.1 230,654 - GFF1374 0.81 +0.7 230,654 - GFF1374 0.81 -0.2 230,654 - GFF1374 0.81 +0.1 230,654 - GFF1374 0.81 -0.0 230,654 - GFF1374 0.81 -0.2 230,654 - GFF1374 0.81 +0.3 230,654 - GFF1374 0.81 +0.6 230,654 - GFF1374 0.81 +0.2 230,654 - GFF1374 0.81 -0.1 230,654 - GFF1374 0.81 -0.1 230,654 - GFF1374 0.81 +0.3 230,654 - GFF1374 0.81 +0.1
Or see this region's nucleotide sequence