Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1260 and GFF1261 are separated by 1 nucleotides GFF1261 and GFF1262 are separated by 24 nucleotides GFF1262 and GFF1263 overlap by 4 nucleotides GFF1263 and GFF1264 are separated by 9 nucleotides
GFF1260 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 119,473 to 120,354
GFF1260
GFF1261 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 120,356 to 121,207
GFF1261
GFF1262 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 121,232 to 122,236
GFF1262
GFF1263 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 122,233 to 122,991
GFF1263
GFF1264 - hypothetical protein, at 123,001 to 123,270
GFF1264
Position (kb) 121
122
123 Strain fitness (log2 ratio) -2
-1
0
1
2 at 120.350 kb on - strand at 120.374 kb on + strand at 120.375 kb on - strand at 120.437 kb on + strand at 120.438 kb on - strand at 120.528 kb on - strand, within GFF1261 at 120.672 kb on - strand, within GFF1261 at 120.758 kb on + strand, within GFF1261 at 120.758 kb on + strand, within GFF1261 at 120.759 kb on - strand, within GFF1261 at 120.759 kb on - strand, within GFF1261 at 120.794 kb on + strand, within GFF1261 at 120.794 kb on + strand, within GFF1261 at 120.794 kb on + strand, within GFF1261 at 120.795 kb on - strand, within GFF1261 at 120.795 kb on - strand, within GFF1261 at 120.795 kb on - strand, within GFF1261 at 121.004 kb on + strand, within GFF1261 at 121.004 kb on + strand, within GFF1261 at 121.004 kb on + strand, within GFF1261 at 121.005 kb on - strand, within GFF1261 at 121.005 kb on - strand, within GFF1261 at 121.005 kb on - strand, within GFF1261 at 121.005 kb on - strand, within GFF1261 at 121.005 kb on - strand, within GFF1261 at 121.044 kb on - strand, within GFF1261 at 121.044 kb on - strand, within GFF1261 at 121.205 kb on + strand at 121.205 kb on + strand at 121.205 kb on + strand at 121.205 kb on + strand at 121.206 kb on - strand at 121.206 kb on - strand at 121.269 kb on - strand at 121.493 kb on + strand, within GFF1262 at 121.493 kb on + strand, within GFF1262 at 121.536 kb on - strand, within GFF1262 at 121.907 kb on + strand, within GFF1262 at 121.907 kb on + strand, within GFF1262 at 121.907 kb on + strand, within GFF1262 at 121.907 kb on + strand, within GFF1262 at 121.907 kb on + strand, within GFF1262 at 121.908 kb on - strand, within GFF1262 at 122.362 kb on + strand, within GFF1263 at 122.362 kb on + strand, within GFF1263 at 122.363 kb on - strand, within GFF1263 at 122.837 kb on + strand, within GFF1263 at 122.837 kb on + strand, within GFF1263 at 122.837 kb on + strand, within GFF1263 at 122.838 kb on - strand, within GFF1263 at 122.893 kb on + strand, within GFF1263 at 122.893 kb on + strand, within GFF1263 at 122.893 kb on + strand, within GFF1263 at 122.894 kb on - strand, within GFF1263 at 122.894 kb on - strand, within GFF1263 at 122.894 kb on - strand, within GFF1263 at 122.894 kb on - strand, within GFF1263 at 122.895 kb on + strand, within GFF1263 at 122.896 kb on - strand, within GFF1263 at 122.896 kb on - strand, within GFF1263 at 123.059 kb on + strand, within GFF1264 at 123.059 kb on + strand, within GFF1264 at 123.059 kb on + strand, within GFF1264 at 123.060 kb on - strand, within GFF1264 at 123.060 kb on - strand, within GFF1264 at 123.060 kb on - strand, within GFF1264
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 120,350 - -1.4 120,374 + -0.7 120,375 - -0.1 120,437 + +0.5 120,438 - -0.5 120,528 - GFF1261 0.20 +0.1 120,672 - GFF1261 0.37 -0.2 120,758 + GFF1261 0.47 +0.5 120,758 + GFF1261 0.47 +0.1 120,759 - GFF1261 0.47 -0.2 120,759 - GFF1261 0.47 +0.2 120,794 + GFF1261 0.51 +1.3 120,794 + GFF1261 0.51 -0.1 120,794 + GFF1261 0.51 -0.1 120,795 - GFF1261 0.52 +0.9 120,795 - GFF1261 0.52 -0.4 120,795 - GFF1261 0.52 +0.5 121,004 + GFF1261 0.76 -1.8 121,004 + GFF1261 0.76 +0.4 121,004 + GFF1261 0.76 +1.2 121,005 - GFF1261 0.76 +0.8 121,005 - GFF1261 0.76 -0.3 121,005 - GFF1261 0.76 -0.5 121,005 - GFF1261 0.76 +0.9 121,005 - GFF1261 0.76 +0.1 121,044 - GFF1261 0.81 -2.2 121,044 - GFF1261 0.81 +0.3 121,205 + +1.1 121,205 + +0.2 121,205 + +0.2 121,205 + +2.1 121,206 - +0.1 121,206 - +0.0 121,269 - -0.0 121,493 + GFF1262 0.26 -0.6 121,493 + GFF1262 0.26 -0.1 121,536 - GFF1262 0.30 -0.0 121,907 + GFF1262 0.67 -0.0 121,907 + GFF1262 0.67 +0.2 121,907 + GFF1262 0.67 -1.3 121,907 + GFF1262 0.67 -1.0 121,907 + GFF1262 0.67 -0.4 121,908 - GFF1262 0.67 +0.4 122,362 + GFF1263 0.17 +0.3 122,362 + GFF1263 0.17 +0.1 122,363 - GFF1263 0.17 -0.3 122,837 + GFF1263 0.80 +0.5 122,837 + GFF1263 0.80 +0.3 122,837 + GFF1263 0.80 -0.2 122,838 - GFF1263 0.80 +0.1 122,893 + GFF1263 0.87 -0.3 122,893 + GFF1263 0.87 +0.1 122,893 + GFF1263 0.87 -0.2 122,894 - GFF1263 0.87 -0.3 122,894 - GFF1263 0.87 +0.8 122,894 - GFF1263 0.87 -0.0 122,894 - GFF1263 0.87 +0.2 122,895 + GFF1263 0.87 -0.8 122,896 - GFF1263 0.87 -0.6 122,896 - GFF1263 0.87 -0.1 123,059 + GFF1264 0.21 -0.5 123,059 + GFF1264 0.21 +0.5 123,059 + GFF1264 0.21 -0.3 123,060 - GFF1264 0.22 +0.1 123,060 - GFF1264 0.22 -0.3 123,060 - GFF1264 0.22 -0.8
Or see this region's nucleotide sequence