Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1241 and GFF1242 overlap by 4 nucleotides GFF1242 and GFF1243 are separated by 10 nucleotides
GFF1241 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 100,005 to 101,792
GFF1241
GFF1242 - mRNA 3-end processing factor, at 101,789 to 102,808
GFF1242
GFF1243 - Cardiolipin synthetase (EC 2.7.8.-), at 102,819 to 104,084
GFF1243
Position (kb) 101
102
103 Strain fitness (log2 ratio) -1
0
1 at 101.254 kb on + strand, within GFF1241 at 101.254 kb on + strand, within GFF1241 at 101.255 kb on - strand, within GFF1241 at 101.255 kb on - strand, within GFF1241 at 101.567 kb on - strand, within GFF1241 at 101.567 kb on - strand, within GFF1241 at 101.713 kb on + strand at 101.862 kb on + strand at 101.863 kb on - strand at 102.177 kb on + strand, within GFF1242 at 102.178 kb on - strand, within GFF1242 at 102.273 kb on + strand, within GFF1242 at 102.273 kb on + strand, within GFF1242 at 102.274 kb on - strand, within GFF1242 at 102.366 kb on + strand, within GFF1242 at 102.471 kb on + strand, within GFF1242 at 102.666 kb on + strand, within GFF1242 at 102.667 kb on - strand, within GFF1242 at 102.667 kb on - strand, within GFF1242 at 102.747 kb on + strand at 102.747 kb on + strand at 102.747 kb on + strand at 102.747 kb on + strand at 102.747 kb on + strand at 102.748 kb on - strand at 102.748 kb on - strand at 102.748 kb on - strand at 102.748 kb on - strand at 102.748 kb on - strand at 102.768 kb on + strand at 102.768 kb on + strand at 102.820 kb on + strand at 102.820 kb on + strand at 102.820 kb on + strand at 102.820 kb on + strand at 102.821 kb on - strand at 102.823 kb on + strand at 102.961 kb on + strand, within GFF1243 at 102.962 kb on - strand, within GFF1243 at 102.962 kb on - strand, within GFF1243 at 103.114 kb on + strand, within GFF1243 at 103.114 kb on + strand, within GFF1243 at 103.114 kb on + strand, within GFF1243 at 103.114 kb on + strand, within GFF1243 at 103.114 kb on + strand, within GFF1243 at 103.115 kb on - strand, within GFF1243 at 103.115 kb on - strand, within GFF1243 at 103.115 kb on - strand, within GFF1243 at 103.153 kb on + strand, within GFF1243 at 103.153 kb on + strand, within GFF1243 at 103.153 kb on + strand, within GFF1243 at 103.279 kb on + strand, within GFF1243 at 103.279 kb on + strand, within GFF1243 at 103.279 kb on + strand, within GFF1243 at 103.280 kb on - strand, within GFF1243 at 103.331 kb on - strand, within GFF1243 at 103.429 kb on + strand, within GFF1243 at 103.430 kb on - strand, within GFF1243
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 101,254 + GFF1241 0.70 +0.6 101,254 + GFF1241 0.70 -0.3 101,255 - GFF1241 0.70 -0.5 101,255 - GFF1241 0.70 -0.2 101,567 - GFF1241 0.87 -0.1 101,567 - GFF1241 0.87 -0.1 101,713 + +0.7 101,862 + -1.0 101,863 - +0.0 102,177 + GFF1242 0.38 -1.4 102,178 - GFF1242 0.38 +0.6 102,273 + GFF1242 0.47 +0.4 102,273 + GFF1242 0.47 +0.6 102,274 - GFF1242 0.48 -0.5 102,366 + GFF1242 0.57 -0.2 102,471 + GFF1242 0.67 +0.8 102,666 + GFF1242 0.86 +0.5 102,667 - GFF1242 0.86 -0.5 102,667 - GFF1242 0.86 +0.3 102,747 + +1.2 102,747 + -0.2 102,747 + +1.5 102,747 + +0.1 102,747 + +0.1 102,748 - -0.3 102,748 - -0.8 102,748 - -0.5 102,748 - -0.2 102,748 - +0.2 102,768 + -1.4 102,768 + -0.2 102,820 + -0.3 102,820 + +0.5 102,820 + +0.5 102,820 + +1.5 102,821 - -1.3 102,823 + -0.1 102,961 + GFF1243 0.11 -0.0 102,962 - GFF1243 0.11 +0.4 102,962 - GFF1243 0.11 +1.5 103,114 + GFF1243 0.23 -0.1 103,114 + GFF1243 0.23 -0.3 103,114 + GFF1243 0.23 +0.8 103,114 + GFF1243 0.23 -0.5 103,114 + GFF1243 0.23 -0.1 103,115 - GFF1243 0.23 -0.9 103,115 - GFF1243 0.23 +0.1 103,115 - GFF1243 0.23 -0.0 103,153 + GFF1243 0.26 +0.1 103,153 + GFF1243 0.26 +1.1 103,153 + GFF1243 0.26 +0.5 103,279 + GFF1243 0.36 +0.0 103,279 + GFF1243 0.36 +0.0 103,279 + GFF1243 0.36 -0.5 103,280 - GFF1243 0.36 -0.2 103,331 - GFF1243 0.40 +0.4 103,429 + GFF1243 0.48 -0.2 103,430 - GFF1243 0.48 -0.7
Or see this region's nucleotide sequence