Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1055 and GFF1056 are separated by 60 nucleotides
GFF1055 - hypothetical protein, at 794,097 to 794,219
GFF1055
GFF1056 - sensory box histidine kinase/response regulator, at 794,280 to 796,652
GFF1056
Position (kb) 794
795
796
797 Strain fitness (log2 ratio) -2
-1
0
1 at 793.399 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.399 kb on + strand at 793.400 kb on - strand at 793.400 kb on - strand at 793.400 kb on - strand at 793.400 kb on - strand at 793.400 kb on - strand at 793.400 kb on - strand at 793.400 kb on - strand at 793.454 kb on + strand at 793.454 kb on + strand at 793.455 kb on - strand at 793.528 kb on - strand at 793.535 kb on - strand at 793.603 kb on + strand at 793.603 kb on + strand at 793.604 kb on - strand at 793.604 kb on - strand at 793.604 kb on - strand at 793.667 kb on + strand at 793.667 kb on + strand at 793.668 kb on - strand at 793.668 kb on - strand at 793.668 kb on - strand at 793.668 kb on - strand at 793.668 kb on - strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.706 kb on + strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.707 kb on - strand at 793.747 kb on + strand at 793.748 kb on - strand at 793.831 kb on + strand at 793.831 kb on + strand at 793.831 kb on + strand at 793.831 kb on + strand at 793.832 kb on - strand at 794.022 kb on + strand at 794.022 kb on + strand at 794.023 kb on - strand at 794.034 kb on - strand at 794.133 kb on + strand, within GFF1055 at 794.133 kb on + strand, within GFF1055 at 794.172 kb on + strand, within GFF1055 at 794.172 kb on + strand, within GFF1055 at 794.172 kb on + strand, within GFF1055 at 794.175 kb on + strand, within GFF1055 at 794.175 kb on + strand, within GFF1055 at 794.176 kb on - strand, within GFF1055 at 794.176 kb on - strand, within GFF1055 at 794.176 kb on - strand, within GFF1055 at 794.176 kb on - strand, within GFF1055 at 794.256 kb on + strand at 794.257 kb on - strand at 794.322 kb on + strand at 794.322 kb on + strand at 794.323 kb on - strand at 794.323 kb on - strand at 794.323 kb on - strand at 794.323 kb on - strand at 794.323 kb on - strand at 794.397 kb on + strand at 794.398 kb on - strand at 794.433 kb on - strand at 794.447 kb on + strand at 794.447 kb on + strand at 794.448 kb on - strand at 794.448 kb on - strand at 794.448 kb on - strand at 794.448 kb on - strand at 794.448 kb on - strand at 794.518 kb on - strand, within GFF1056 at 794.637 kb on + strand, within GFF1056 at 794.637 kb on + strand, within GFF1056 at 794.644 kb on + strand, within GFF1056 at 794.644 kb on + strand, within GFF1056 at 794.644 kb on + strand, within GFF1056 at 794.644 kb on + strand, within GFF1056 at 794.645 kb on - strand, within GFF1056 at 794.645 kb on - strand, within GFF1056 at 794.645 kb on - strand, within GFF1056 at 794.645 kb on - strand, within GFF1056 at 794.645 kb on - strand, within GFF1056 at 794.646 kb on + strand, within GFF1056 at 794.646 kb on + strand, within GFF1056 at 794.646 kb on + strand, within GFF1056 at 794.646 kb on + strand, within GFF1056 at 794.646 kb on + strand, within GFF1056 at 794.646 kb on + strand, within GFF1056 at 794.646 kb on + strand, within GFF1056 at 794.713 kb on - strand, within GFF1056 at 794.713 kb on - strand, within GFF1056 at 794.713 kb on - strand, within GFF1056 at 794.713 kb on - strand, within GFF1056 at 794.716 kb on + strand, within GFF1056 at 794.717 kb on - strand, within GFF1056 at 794.889 kb on + strand, within GFF1056 at 794.889 kb on + strand, within GFF1056 at 795.022 kb on - strand, within GFF1056 at 795.067 kb on + strand, within GFF1056 at 795.113 kb on + strand, within GFF1056 at 795.113 kb on + strand, within GFF1056 at 795.149 kb on + strand, within GFF1056 at 795.331 kb on + strand, within GFF1056 at 795.331 kb on + strand, within GFF1056 at 795.331 kb on + strand, within GFF1056 at 795.332 kb on - strand, within GFF1056 at 795.332 kb on - strand, within GFF1056 at 795.367 kb on + strand, within GFF1056 at 795.557 kb on - strand, within GFF1056 at 795.615 kb on + strand, within GFF1056 at 795.615 kb on + strand, within GFF1056 at 795.674 kb on - strand, within GFF1056 at 795.731 kb on + strand, within GFF1056 at 795.731 kb on + strand, within GFF1056 at 795.731 kb on + strand, within GFF1056 at 795.732 kb on - strand, within GFF1056 at 795.822 kb on + strand, within GFF1056 at 795.822 kb on + strand, within GFF1056 at 795.823 kb on - strand, within GFF1056 at 795.873 kb on + strand, within GFF1056 at 795.873 kb on + strand, within GFF1056 at 795.873 kb on + strand, within GFF1056 at 795.874 kb on - strand, within GFF1056 at 795.984 kb on + strand, within GFF1056 at 795.984 kb on + strand, within GFF1056 at 795.985 kb on - strand, within GFF1056 at 796.147 kb on + strand, within GFF1056 at 796.148 kb on - strand, within GFF1056 at 796.148 kb on - strand, within GFF1056 at 796.148 kb on - strand, within GFF1056 at 796.241 kb on - strand, within GFF1056 at 796.299 kb on + strand, within GFF1056 at 796.400 kb on + strand, within GFF1056 at 796.478 kb on + strand at 796.483 kb on + strand at 796.484 kb on - strand at 796.484 kb on - strand at 796.758 kb on + strand at 796.759 kb on - strand at 796.759 kb on - strand at 796.799 kb on - strand at 796.799 kb on - strand at 796.818 kb on - strand at 796.864 kb on + strand at 796.941 kb on + strand at 796.942 kb on - strand at 796.942 kb on - strand at 797.327 kb on + strand at 797.358 kb on - strand at 797.358 kb on - strand at 797.449 kb on + strand at 797.450 kb on - strand at 797.617 kb on + strand at 797.618 kb on - strand at 797.618 kb on - strand at 797.643 kb on + strand at 797.644 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 793,399 + -1.4 793,399 + -0.0 793,399 + -0.2 793,399 + +0.7 793,399 + +0.0 793,399 + +0.7 793,399 + +0.4 793,399 + +1.6 793,400 - +0.4 793,400 - -0.2 793,400 - -0.1 793,400 - +0.8 793,400 - -0.1 793,400 - -2.0 793,400 - +1.0 793,454 + +0.4 793,454 + +0.1 793,455 - +0.5 793,528 - +0.7 793,535 - +0.0 793,603 + -0.1 793,603 + +0.1 793,604 - -0.0 793,604 - -0.4 793,604 - -0.1 793,667 + +0.1 793,667 + -0.2 793,668 - -0.6 793,668 - +0.1 793,668 - +0.2 793,668 - +0.0 793,668 - +0.2 793,706 + -0.2 793,706 + -1.3 793,706 + +0.0 793,706 + +0.6 793,706 + +0.3 793,706 + +0.2 793,706 + -0.2 793,706 + +1.1 793,707 - +0.1 793,707 - -0.1 793,707 - -0.2 793,707 - -0.4 793,707 - +0.4 793,707 - -0.0 793,707 - -0.1 793,707 - -0.4 793,747 + +0.9 793,748 - +0.0 793,831 + +0.3 793,831 + +0.1 793,831 + +0.8 793,831 + -0.2 793,832 - +0.5 794,022 + +0.1 794,022 + -0.1 794,023 - +0.6 794,034 - +0.6 794,133 + GFF1055 0.29 +0.1 794,133 + GFF1055 0.29 +0.4 794,172 + GFF1055 0.61 +0.4 794,172 + GFF1055 0.61 +0.0 794,172 + GFF1055 0.61 +0.9 794,175 + GFF1055 0.63 +0.6 794,175 + GFF1055 0.63 -0.7 794,176 - GFF1055 0.64 +0.1 794,176 - GFF1055 0.64 +1.6 794,176 - GFF1055 0.64 -0.3 794,176 - GFF1055 0.64 +0.2 794,256 + +0.0 794,257 - -0.4 794,322 + +0.1 794,322 + -1.1 794,323 - +0.0 794,323 - -0.5 794,323 - -0.1 794,323 - +0.6 794,323 - +0.2 794,397 + -0.1 794,398 - -0.5 794,433 - +0.2 794,447 + +0.3 794,447 + +0.1 794,448 - -0.0 794,448 - +0.1 794,448 - +0.5 794,448 - +0.4 794,448 - -0.4 794,518 - GFF1056 0.10 +0.4 794,637 + GFF1056 0.15 -0.3 794,637 + GFF1056 0.15 +0.4 794,644 + GFF1056 0.15 +0.5 794,644 + GFF1056 0.15 -0.7 794,644 + GFF1056 0.15 +0.1 794,644 + GFF1056 0.15 +0.6 794,645 - GFF1056 0.15 -0.3 794,645 - GFF1056 0.15 +0.3 794,645 - GFF1056 0.15 +0.3 794,645 - GFF1056 0.15 -0.3 794,645 - GFF1056 0.15 +0.7 794,646 + GFF1056 0.15 +0.2 794,646 + GFF1056 0.15 -0.1 794,646 + GFF1056 0.15 +0.2 794,646 + GFF1056 0.15 +1.1 794,646 + GFF1056 0.15 +1.5 794,646 + GFF1056 0.15 -0.5 794,646 + GFF1056 0.15 -0.1 794,713 - GFF1056 0.18 -0.1 794,713 - GFF1056 0.18 -0.3 794,713 - GFF1056 0.18 +0.4 794,713 - GFF1056 0.18 -0.0 794,716 + GFF1056 0.18 +0.3 794,717 - GFF1056 0.18 +1.0 794,889 + GFF1056 0.26 -0.3 794,889 + GFF1056 0.26 +0.3 795,022 - GFF1056 0.31 -0.8 795,067 + GFF1056 0.33 +0.2 795,113 + GFF1056 0.35 -0.5 795,113 + GFF1056 0.35 +0.1 795,149 + GFF1056 0.37 -0.2 795,331 + GFF1056 0.44 -0.7 795,331 + GFF1056 0.44 +1.5 795,331 + GFF1056 0.44 -0.5 795,332 - GFF1056 0.44 -0.3 795,332 - GFF1056 0.44 +0.2 795,367 + GFF1056 0.46 +0.4 795,557 - GFF1056 0.54 +0.2 795,615 + GFF1056 0.56 -0.1 795,615 + GFF1056 0.56 -0.2 795,674 - GFF1056 0.59 -0.1 795,731 + GFF1056 0.61 +0.2 795,731 + GFF1056 0.61 +1.6 795,731 + GFF1056 0.61 +0.6 795,732 - GFF1056 0.61 +0.1 795,822 + GFF1056 0.65 +0.7 795,822 + GFF1056 0.65 +0.5 795,823 - GFF1056 0.65 -1.0 795,873 + GFF1056 0.67 +0.5 795,873 + GFF1056 0.67 -0.5 795,873 + GFF1056 0.67 +0.7 795,874 - GFF1056 0.67 -0.1 795,984 + GFF1056 0.72 +0.6 795,984 + GFF1056 0.72 +0.5 795,985 - GFF1056 0.72 -0.6 796,147 + GFF1056 0.79 +0.1 796,148 - GFF1056 0.79 -0.4 796,148 - GFF1056 0.79 -0.3 796,148 - GFF1056 0.79 +0.5 796,241 - GFF1056 0.83 -0.4 796,299 + GFF1056 0.85 +0.1 796,400 + GFF1056 0.89 +0.8 796,478 + +0.2 796,483 + -0.1 796,484 - -2.2 796,484 - +0.2 796,758 + +1.2 796,759 - -0.4 796,759 - -0.2 796,799 - -0.4 796,799 - +0.8 796,818 - -1.1 796,864 + -0.1 796,941 + -0.0 796,942 - +0.0 796,942 - -1.7 797,327 + +0.3 797,358 - +0.1 797,358 - +0.3 797,449 + +0.3 797,450 - -1.4 797,617 + +0.9 797,618 - -0.0 797,618 - +0.2 797,643 + -0.6 797,644 - -0.4
Or see this region's nucleotide sequence