Experiment: Xyloglucan from tamarind 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04616 and BACOVA_04617 overlap by 23 nucleotides BACOVA_04617 and BACOVA_04618 are separated by 44 nucleotides BACOVA_04618 and BACOVA_04619 are separated by 57 nucleotides BACOVA_04619 and BACOVA_04620 are separated by 415 nucleotides BACOVA_04620 and BACOVA_04621 are separated by 82 nucleotides
BACOVA_04616: BACOVA_04616 - glutathione peroxidase, at 14,420 to 14,962
_04616
BACOVA_04617: BACOVA_04617 - hydrolase, NUDIX family, at 14,940 to 15,458
_04617
BACOVA_04618: BACOVA_04618 - putative S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 15,503 to 16,723
_04618
BACOVA_04619: BACOVA_04619 - tRNA-Pro, at 16,781 to 16,855
_04619
BACOVA_04620: BACOVA_04620 - hypothetical protein, at 17,271 to 17,423
_04620
BACOVA_04621: BACOVA_04621 - site-specific recombinase, phage integrase family, at 17,506 to 18,780
_04621
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 14.513 kb on - strand, within BACOVA_04616 at 14.521 kb on + strand, within BACOVA_04616 at 14.552 kb on - strand, within BACOVA_04616 at 14.565 kb on + strand, within BACOVA_04616 at 14.582 kb on - strand, within BACOVA_04616 at 14.603 kb on + strand, within BACOVA_04616 at 14.604 kb on - strand, within BACOVA_04616 at 14.621 kb on - strand, within BACOVA_04616 at 14.622 kb on + strand, within BACOVA_04616 at 14.622 kb on + strand, within BACOVA_04616 at 14.634 kb on - strand, within BACOVA_04616 at 14.654 kb on - strand, within BACOVA_04616 at 14.654 kb on - strand, within BACOVA_04616 at 14.702 kb on - strand, within BACOVA_04616 at 14.736 kb on - strand, within BACOVA_04616 at 14.761 kb on + strand, within BACOVA_04616 at 14.798 kb on + strand, within BACOVA_04616 at 14.799 kb on - strand, within BACOVA_04616 at 14.941 kb on + strand at 14.941 kb on + strand at 14.942 kb on - strand at 14.960 kb on + strand at 14.961 kb on - strand at 15.146 kb on - strand, within BACOVA_04617 at 15.184 kb on - strand, within BACOVA_04617 at 15.207 kb on + strand, within BACOVA_04617 at 15.239 kb on + strand, within BACOVA_04617 at 15.250 kb on - strand, within BACOVA_04617 at 15.308 kb on - strand, within BACOVA_04617 at 15.308 kb on - strand, within BACOVA_04617 at 15.308 kb on - strand, within BACOVA_04617 at 15.330 kb on + strand, within BACOVA_04617 at 15.330 kb on + strand, within BACOVA_04617 at 15.330 kb on + strand, within BACOVA_04617 at 15.331 kb on - strand, within BACOVA_04617 at 15.346 kb on - strand, within BACOVA_04617 at 15.405 kb on - strand, within BACOVA_04617 at 15.405 kb on - strand, within BACOVA_04617 at 15.447 kb on - strand at 15.468 kb on + strand at 15.469 kb on - strand at 15.504 kb on + strand at 15.510 kb on - strand at 15.536 kb on + strand at 15.564 kb on + strand at 15.565 kb on - strand at 15.565 kb on - strand at 15.687 kb on - strand, within BACOVA_04618 at 15.687 kb on - strand, within BACOVA_04618 at 15.687 kb on - strand, within BACOVA_04618 at 15.692 kb on - strand, within BACOVA_04618 at 15.739 kb on - strand, within BACOVA_04618 at 15.739 kb on - strand, within BACOVA_04618 at 15.743 kb on + strand, within BACOVA_04618 at 15.743 kb on + strand, within BACOVA_04618 at 15.744 kb on - strand, within BACOVA_04618 at 15.747 kb on - strand, within BACOVA_04618 at 15.783 kb on + strand, within BACOVA_04618 at 15.815 kb on + strand, within BACOVA_04618 at 15.829 kb on + strand, within BACOVA_04618 at 15.829 kb on + strand, within BACOVA_04618 at 15.834 kb on + strand, within BACOVA_04618 at 15.853 kb on + strand, within BACOVA_04618 at 15.853 kb on + strand, within BACOVA_04618 at 15.854 kb on - strand, within BACOVA_04618 at 15.854 kb on - strand, within BACOVA_04618 at 15.896 kb on - strand, within BACOVA_04618 at 15.903 kb on - strand, within BACOVA_04618 at 15.911 kb on - strand, within BACOVA_04618 at 15.963 kb on - strand, within BACOVA_04618 at 15.963 kb on - strand, within BACOVA_04618 at 15.964 kb on + strand, within BACOVA_04618 at 15.966 kb on + strand, within BACOVA_04618 at 15.967 kb on - strand, within BACOVA_04618 at 15.967 kb on - strand, within BACOVA_04618 at 15.967 kb on - strand, within BACOVA_04618 at 15.967 kb on - strand, within BACOVA_04618 at 16.032 kb on - strand, within BACOVA_04618 at 16.037 kb on + strand, within BACOVA_04618 at 16.037 kb on + strand, within BACOVA_04618 at 16.038 kb on - strand, within BACOVA_04618 at 16.038 kb on - strand, within BACOVA_04618 at 16.038 kb on - strand, within BACOVA_04618 at 16.085 kb on + strand, within BACOVA_04618 at 16.103 kb on + strand, within BACOVA_04618 at 16.135 kb on + strand, within BACOVA_04618 at 16.142 kb on - strand, within BACOVA_04618 at 16.147 kb on - strand, within BACOVA_04618 at 16.158 kb on + strand, within BACOVA_04618 at 16.159 kb on - strand, within BACOVA_04618 at 16.193 kb on + strand, within BACOVA_04618 at 16.197 kb on + strand, within BACOVA_04618 at 16.207 kb on + strand, within BACOVA_04618 at 16.295 kb on - strand, within BACOVA_04618 at 16.324 kb on + strand, within BACOVA_04618 at 16.563 kb on + strand, within BACOVA_04618 at 16.594 kb on + strand, within BACOVA_04618 at 16.594 kb on + strand, within BACOVA_04618 at 16.612 kb on - strand at 16.613 kb on + strand at 16.614 kb on - strand at 16.614 kb on - strand at 16.616 kb on + strand at 16.617 kb on - strand at 16.654 kb on + strand at 16.660 kb on + strand at 16.660 kb on + strand at 16.660 kb on + strand at 16.661 kb on - strand at 16.686 kb on + strand at 16.686 kb on + strand at 16.687 kb on - strand at 16.687 kb on - strand at 16.696 kb on + strand at 16.697 kb on - strand at 16.702 kb on + strand at 16.703 kb on - strand at 16.703 kb on - strand at 16.703 kb on - strand at 16.919 kb on + strand at 16.933 kb on + strand at 16.933 kb on + strand at 17.020 kb on + strand at 17.021 kb on - strand at 17.024 kb on + strand at 17.082 kb on + strand at 17.153 kb on - strand at 17.162 kb on - strand at 17.162 kb on - strand at 17.164 kb on - strand at 17.334 kb on - strand, within BACOVA_04620 at 17.479 kb on - strand at 17.530 kb on - strand at 17.535 kb on + strand at 17.597 kb on + strand at 17.597 kb on + strand at 17.598 kb on - strand at 17.603 kb on + strand at 17.622 kb on + strand at 17.623 kb on - strand at 17.632 kb on + strand at 17.670 kb on + strand, within BACOVA_04621 at 17.680 kb on - strand, within BACOVA_04621 at 17.692 kb on - strand, within BACOVA_04621 at 17.701 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621 at 17.720 kb on - strand, within BACOVA_04621
Per-strain Table
Position Strand Gene LocusTag Fraction Xyloglucan from tamarind 2.5 mg/mL (C) remove 14,513 - BACOVA_04616 0.17 -1.8 14,521 + BACOVA_04616 0.19 +0.2 14,552 - BACOVA_04616 0.24 +0.8 14,565 + BACOVA_04616 0.27 -1.0 14,582 - BACOVA_04616 0.30 +0.8 14,603 + BACOVA_04616 0.34 -0.7 14,604 - BACOVA_04616 0.34 -1.0 14,621 - BACOVA_04616 0.37 -0.1 14,622 + BACOVA_04616 0.37 -0.6 14,622 + BACOVA_04616 0.37 +0.4 14,634 - BACOVA_04616 0.39 -1.8 14,654 - BACOVA_04616 0.43 +0.9 14,654 - BACOVA_04616 0.43 +1.2 14,702 - BACOVA_04616 0.52 -0.6 14,736 - BACOVA_04616 0.58 -0.5 14,761 + BACOVA_04616 0.63 -1.2 14,798 + BACOVA_04616 0.70 -0.6 14,799 - BACOVA_04616 0.70 +0.2 14,941 + -0.0 14,941 + -0.4 14,942 - -1.0 14,960 + -0.1 14,961 - -2.9 15,146 - BACOVA_04617 0.40 -0.9 15,184 - BACOVA_04617 0.47 -0.7 15,207 + BACOVA_04617 0.51 -3.3 15,239 + BACOVA_04617 0.58 +0.1 15,250 - BACOVA_04617 0.60 -1.0 15,308 - BACOVA_04617 0.71 +0.3 15,308 - BACOVA_04617 0.71 -0.9 15,308 - BACOVA_04617 0.71 +0.5 15,330 + BACOVA_04617 0.75 +0.4 15,330 + BACOVA_04617 0.75 +0.7 15,330 + BACOVA_04617 0.75 -0.6 15,331 - BACOVA_04617 0.75 -0.6 15,346 - BACOVA_04617 0.78 +0.2 15,405 - BACOVA_04617 0.90 -1.0 15,405 - BACOVA_04617 0.90 +0.1 15,447 - -0.6 15,468 + +0.3 15,469 - +0.6 15,504 + -1.9 15,510 - -0.3 15,536 + +0.2 15,564 + -1.1 15,565 - +0.1 15,565 - -0.8 15,687 - BACOVA_04618 0.15 -1.4 15,687 - BACOVA_04618 0.15 -1.0 15,687 - BACOVA_04618 0.15 +0.7 15,692 - BACOVA_04618 0.15 -0.0 15,739 - BACOVA_04618 0.19 -1.1 15,739 - BACOVA_04618 0.19 +0.0 15,743 + BACOVA_04618 0.20 -0.2 15,743 + BACOVA_04618 0.20 +0.6 15,744 - BACOVA_04618 0.20 +0.5 15,747 - BACOVA_04618 0.20 +0.6 15,783 + BACOVA_04618 0.23 -1.6 15,815 + BACOVA_04618 0.26 -0.6 15,829 + BACOVA_04618 0.27 +0.4 15,829 + BACOVA_04618 0.27 +0.7 15,834 + BACOVA_04618 0.27 -1.8 15,853 + BACOVA_04618 0.29 -0.1 15,853 + BACOVA_04618 0.29 -0.7 15,854 - BACOVA_04618 0.29 -0.2 15,854 - BACOVA_04618 0.29 +0.7 15,896 - BACOVA_04618 0.32 -1.9 15,903 - BACOVA_04618 0.33 +0.3 15,911 - BACOVA_04618 0.33 +0.1 15,963 - BACOVA_04618 0.38 -0.3 15,963 - BACOVA_04618 0.38 -1.1 15,964 + BACOVA_04618 0.38 -0.8 15,966 + BACOVA_04618 0.38 -1.1 15,967 - BACOVA_04618 0.38 +0.2 15,967 - BACOVA_04618 0.38 +1.7 15,967 - BACOVA_04618 0.38 -0.6 15,967 - BACOVA_04618 0.38 -0.9 16,032 - BACOVA_04618 0.43 +0.7 16,037 + BACOVA_04618 0.44 +0.7 16,037 + BACOVA_04618 0.44 -2.8 16,038 - BACOVA_04618 0.44 -0.4 16,038 - BACOVA_04618 0.44 -1.5 16,038 - BACOVA_04618 0.44 -0.1 16,085 + BACOVA_04618 0.48 +0.3 16,103 + BACOVA_04618 0.49 -0.2 16,135 + BACOVA_04618 0.52 -0.1 16,142 - BACOVA_04618 0.52 -1.7 16,147 - BACOVA_04618 0.53 -0.2 16,158 + BACOVA_04618 0.54 -0.2 16,159 - BACOVA_04618 0.54 -0.1 16,193 + BACOVA_04618 0.57 -1.1 16,197 + BACOVA_04618 0.57 +0.5 16,207 + BACOVA_04618 0.58 -1.5 16,295 - BACOVA_04618 0.65 -0.3 16,324 + BACOVA_04618 0.67 -1.1 16,563 + BACOVA_04618 0.87 +1.3 16,594 + BACOVA_04618 0.89 +0.1 16,594 + BACOVA_04618 0.89 -0.5 16,612 - -0.1 16,613 + -2.2 16,614 - -0.0 16,614 - -0.5 16,616 + -2.1 16,617 - -2.0 16,654 + -0.9 16,660 + -1.1 16,660 + -1.8 16,660 + -0.5 16,661 - -1.4 16,686 + +0.5 16,686 + -1.2 16,687 - +0.0 16,687 - -0.4 16,696 + -1.5 16,697 - +0.1 16,702 + +0.4 16,703 - -1.7 16,703 - -0.1 16,703 - -0.3 16,919 + -0.9 16,933 + -0.4 16,933 + +0.1 17,020 + +1.2 17,021 - -2.5 17,024 + -0.8 17,082 + +0.2 17,153 - -0.2 17,162 - -0.3 17,162 - -0.4 17,164 - -0.4 17,334 - BACOVA_04620 0.41 -0.8 17,479 - +0.2 17,530 - +1.0 17,535 + -0.9 17,597 + +0.2 17,597 + -0.3 17,598 - +0.9 17,603 + -2.3 17,622 + +0.4 17,623 - -1.1 17,632 + -0.1 17,670 + BACOVA_04621 0.13 -1.3 17,680 - BACOVA_04621 0.14 -0.2 17,692 - BACOVA_04621 0.15 -0.0 17,701 - BACOVA_04621 0.15 -0.9 17,720 - BACOVA_04621 0.17 +0.5 17,720 - BACOVA_04621 0.17 +0.4 17,720 - BACOVA_04621 0.17 +0.6
Or see this region's nucleotide sequence