Experiment: Xyloglucan from tamarind 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04023 and BACOVA_04024 are separated by 110 nucleotides BACOVA_04024 and BACOVA_04025 are separated by 18 nucleotides BACOVA_04025 and BACOVA_04026 are separated by 80 nucleotides BACOVA_04026 and BACOVA_04027 overlap by 64 nucleotides BACOVA_04027 and BACOVA_04028 are separated by 46 nucleotides
BACOVA_04023: BACOVA_04023 - NADH:ubiquinone oxidoreductase, D subunit, at 357,531 to 358,172
_04023
BACOVA_04024: BACOVA_04024 - NADH:ubiquinone oxidoreductase, E subunit, at 358,283 to 358,909
_04024
BACOVA_04025: BACOVA_04025 - NADH:ubiquinone oxidoreductase, F subunit, at 358,928 to 360,202
_04025
BACOVA_04026: BACOVA_04026 - hypothetical protein, at 360,283 to 360,516
_04026
BACOVA_04027: BACOVA_04027 - hypothetical protein, at 360,453 to 360,632
_04027
BACOVA_04028: BACOVA_04028 - DEAD/DEAH box helicase, at 360,679 to 362,013
_04028
Position (kb) 358
359
360
361 Strain fitness (log2 ratio) -2
-1
0
1 at 358.111 kb on + strand at 358.111 kb on + strand at 358.211 kb on + strand at 358.230 kb on + strand at 358.251 kb on + strand at 358.267 kb on + strand at 360.247 kb on + strand at 360.251 kb on + strand at 360.252 kb on - strand at 360.282 kb on - strand at 360.314 kb on - strand, within BACOVA_04026 at 360.317 kb on - strand, within BACOVA_04026 at 360.324 kb on - strand, within BACOVA_04026 at 360.355 kb on + strand, within BACOVA_04026 at 360.355 kb on + strand, within BACOVA_04026 at 360.396 kb on + strand, within BACOVA_04026 at 360.396 kb on + strand, within BACOVA_04026 at 360.396 kb on + strand, within BACOVA_04026 at 360.396 kb on + strand, within BACOVA_04026 at 360.397 kb on - strand, within BACOVA_04026 at 360.404 kb on - strand, within BACOVA_04026 at 360.438 kb on - strand, within BACOVA_04026 at 360.447 kb on + strand, within BACOVA_04026 at 360.468 kb on - strand at 360.469 kb on + strand at 360.469 kb on + strand at 360.488 kb on + strand at 360.495 kb on + strand at 360.504 kb on - strand at 360.534 kb on + strand, within BACOVA_04027 at 360.603 kb on + strand, within BACOVA_04027 at 360.603 kb on + strand, within BACOVA_04027 at 360.604 kb on - strand, within BACOVA_04027 at 360.604 kb on - strand, within BACOVA_04027 at 360.604 kb on - strand, within BACOVA_04027 at 360.605 kb on + strand, within BACOVA_04027 at 360.606 kb on - strand, within BACOVA_04027 at 360.650 kb on + strand at 360.789 kb on + strand at 360.791 kb on + strand at 360.792 kb on - strand at 360.794 kb on + strand at 360.829 kb on + strand, within BACOVA_04028 at 360.836 kb on + strand, within BACOVA_04028 at 360.842 kb on + strand, within BACOVA_04028 at 360.850 kb on - strand, within BACOVA_04028 at 360.854 kb on + strand, within BACOVA_04028 at 360.920 kb on + strand, within BACOVA_04028 at 360.920 kb on + strand, within BACOVA_04028 at 361.007 kb on + strand, within BACOVA_04028 at 361.164 kb on + strand, within BACOVA_04028
Per-strain Table
Position Strand Gene LocusTag Fraction Xyloglucan from tamarind 2.5 mg/mL (C) remove 358,111 + +1.1 358,111 + +0.1 358,211 + +0.6 358,230 + -1.2 358,251 + +1.4 358,267 + -0.8 360,247 + -0.9 360,251 + -0.7 360,252 - -1.2 360,282 - -0.9 360,314 - BACOVA_04026 0.13 -0.1 360,317 - BACOVA_04026 0.15 -0.6 360,324 - BACOVA_04026 0.18 -0.3 360,355 + BACOVA_04026 0.31 -2.2 360,355 + BACOVA_04026 0.31 -0.4 360,396 + BACOVA_04026 0.48 +0.3 360,396 + BACOVA_04026 0.48 +0.4 360,396 + BACOVA_04026 0.48 +0.0 360,396 + BACOVA_04026 0.48 -0.4 360,397 - BACOVA_04026 0.49 +0.1 360,404 - BACOVA_04026 0.52 -1.1 360,438 - BACOVA_04026 0.66 -0.9 360,447 + BACOVA_04026 0.70 -1.6 360,468 - -0.3 360,469 + +0.9 360,469 + +0.5 360,488 + -0.4 360,495 + -0.4 360,504 - +1.5 360,534 + BACOVA_04027 0.45 -1.0 360,603 + BACOVA_04027 0.83 -0.6 360,603 + BACOVA_04027 0.83 -0.4 360,604 - BACOVA_04027 0.84 +0.5 360,604 - BACOVA_04027 0.84 +1.1 360,604 - BACOVA_04027 0.84 +0.4 360,605 + BACOVA_04027 0.84 -0.3 360,606 - BACOVA_04027 0.85 +0.2 360,650 + +0.2 360,789 + +1.0 360,791 + +0.5 360,792 - +0.9 360,794 + -1.3 360,829 + BACOVA_04028 0.11 +1.2 360,836 + BACOVA_04028 0.12 +0.4 360,842 + BACOVA_04028 0.12 -0.5 360,850 - BACOVA_04028 0.13 +0.9 360,854 + BACOVA_04028 0.13 -2.6 360,920 + BACOVA_04028 0.18 -2.1 360,920 + BACOVA_04028 0.18 -0.5 361,007 + BACOVA_04028 0.25 -0.5 361,164 + BACOVA_04028 0.36 -1.8
Or see this region's nucleotide sequence