Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01548

Experiment: Xyloglucan from tamarind 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_01545 and BACOVA_01546 are separated by 52 nucleotidesBACOVA_01546 and BACOVA_01547 overlap by 23 nucleotidesBACOVA_01547 and BACOVA_01548 are separated by 49 nucleotidesBACOVA_01548 and BACOVA_01549 are separated by 87 nucleotides BACOVA_01545: BACOVA_01545 - hypothetical protein, at 46,538 to 47,362 _01545 BACOVA_01546: BACOVA_01546 - hypothetical protein, at 47,415 to 47,666 _01546 BACOVA_01547: BACOVA_01547 - hypothetical protein, at 47,644 to 47,760 _01547 BACOVA_01548: BACOVA_01548 - hypothetical protein, at 47,810 to 49,384 _01548 BACOVA_01549: BACOVA_01549 - hypothetical protein, at 49,472 to 50,788 _01549 Position (kb) 47 48 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 46.843 kb on - strand, within BACOVA_01545at 46.845 kb on + strand, within BACOVA_01545at 46.858 kb on + strand, within BACOVA_01545at 46.896 kb on + strand, within BACOVA_01545at 46.897 kb on - strand, within BACOVA_01545at 46.987 kb on + strand, within BACOVA_01545at 46.987 kb on + strand, within BACOVA_01545at 46.988 kb on - strand, within BACOVA_01545at 47.086 kb on + strand, within BACOVA_01545at 47.086 kb on + strand, within BACOVA_01545at 47.087 kb on - strand, within BACOVA_01545at 47.208 kb on + strand, within BACOVA_01545at 47.208 kb on + strand, within BACOVA_01545at 47.366 kb on - strandat 47.368 kb on - strandat 47.368 kb on - strandat 47.388 kb on + strandat 47.448 kb on - strand, within BACOVA_01546at 47.466 kb on + strand, within BACOVA_01546at 47.512 kb on + strand, within BACOVA_01546at 47.512 kb on + strand, within BACOVA_01546at 47.513 kb on - strand, within BACOVA_01546at 47.518 kb on - strand, within BACOVA_01546at 47.529 kb on + strand, within BACOVA_01546at 47.547 kb on + strand, within BACOVA_01546at 47.548 kb on - strand, within BACOVA_01546at 47.550 kb on - strand, within BACOVA_01546at 47.550 kb on - strand, within BACOVA_01546at 47.552 kb on - strand, within BACOVA_01546at 47.552 kb on - strand, within BACOVA_01546at 47.589 kb on - strand, within BACOVA_01546at 47.626 kb on - strand, within BACOVA_01546at 47.658 kb on + strandat 47.771 kb on + strandat 47.800 kb on - strandat 47.801 kb on + strandat 47.801 kb on + strandat 47.802 kb on - strandat 47.812 kb on - strandat 47.812 kb on - strandat 47.837 kb on - strandat 47.855 kb on - strandat 47.862 kb on - strandat 47.872 kb on - strandat 48.062 kb on - strand, within BACOVA_01548at 48.062 kb on - strand, within BACOVA_01548at 48.062 kb on - strand, within BACOVA_01548at 48.067 kb on - strand, within BACOVA_01548at 48.072 kb on - strand, within BACOVA_01548at 48.087 kb on + strand, within BACOVA_01548at 48.099 kb on - strand, within BACOVA_01548at 48.170 kb on - strand, within BACOVA_01548at 48.172 kb on + strand, within BACOVA_01548at 48.172 kb on + strand, within BACOVA_01548at 48.173 kb on - strand, within BACOVA_01548at 48.175 kb on + strand, within BACOVA_01548at 48.175 kb on + strand, within BACOVA_01548at 48.228 kb on - strand, within BACOVA_01548at 48.230 kb on - strand, within BACOVA_01548at 48.237 kb on + strand, within BACOVA_01548at 48.260 kb on + strand, within BACOVA_01548at 48.286 kb on + strand, within BACOVA_01548at 48.287 kb on - strand, within BACOVA_01548at 48.307 kb on + strand, within BACOVA_01548at 48.309 kb on + strand, within BACOVA_01548at 48.309 kb on + strand, within BACOVA_01548at 48.309 kb on + strand, within BACOVA_01548at 48.309 kb on + strand, within BACOVA_01548at 48.310 kb on - strand, within BACOVA_01548at 48.310 kb on - strand, within BACOVA_01548at 48.310 kb on - strand, within BACOVA_01548at 48.310 kb on - strand, within BACOVA_01548at 48.311 kb on + strand, within BACOVA_01548at 48.311 kb on + strand, within BACOVA_01548at 48.311 kb on + strand, within BACOVA_01548at 48.312 kb on - strand, within BACOVA_01548at 48.315 kb on - strand, within BACOVA_01548at 48.315 kb on - strand, within BACOVA_01548at 48.380 kb on - strand, within BACOVA_01548at 48.396 kb on + strand, within BACOVA_01548at 48.422 kb on - strand, within BACOVA_01548at 48.422 kb on - strand, within BACOVA_01548at 48.525 kb on - strand, within BACOVA_01548at 48.534 kb on + strand, within BACOVA_01548at 48.582 kb on - strand, within BACOVA_01548at 48.601 kb on + strand, within BACOVA_01548at 48.658 kb on + strand, within BACOVA_01548at 48.659 kb on - strand, within BACOVA_01548at 48.682 kb on + strand, within BACOVA_01548at 48.682 kb on + strand, within BACOVA_01548at 48.683 kb on - strand, within BACOVA_01548at 48.740 kb on - strand, within BACOVA_01548at 48.755 kb on + strand, within BACOVA_01548at 48.759 kb on + strand, within BACOVA_01548at 48.760 kb on - strand, within BACOVA_01548at 48.760 kb on - strand, within BACOVA_01548at 48.814 kb on + strand, within BACOVA_01548at 48.899 kb on - strand, within BACOVA_01548at 49.092 kb on - strand, within BACOVA_01548at 49.092 kb on - strand, within BACOVA_01548at 49.102 kb on + strand, within BACOVA_01548at 49.103 kb on - strand, within BACOVA_01548at 49.105 kb on - strand, within BACOVA_01548at 49.179 kb on - strand, within BACOVA_01548at 49.262 kb on - strandat 49.262 kb on - strandat 49.263 kb on + strandat 49.263 kb on + strandat 49.263 kb on + strandat 49.263 kb on + strandat 49.263 kb on + strandat 49.264 kb on - strandat 49.264 kb on - strandat 49.324 kb on + strandat 49.324 kb on + strandat 49.327 kb on + strandat 49.327 kb on + strandat 49.327 kb on + strandat 49.328 kb on - strandat 49.328 kb on - strandat 49.442 kb on + strandat 49.455 kb on - strandat 49.455 kb on - strandat 49.456 kb on + strandat 49.459 kb on + strandat 49.470 kb on + strandat 49.471 kb on - strandat 49.564 kb on + strandat 49.617 kb on + strand, within BACOVA_01549at 49.657 kb on - strand, within BACOVA_01549at 49.735 kb on + strand, within BACOVA_01549at 49.736 kb on - strand, within BACOVA_01549at 49.739 kb on + strand, within BACOVA_01549at 49.747 kb on + strand, within BACOVA_01549at 49.748 kb on - strand, within BACOVA_01549at 49.748 kb on - strand, within BACOVA_01549at 49.749 kb on + strand, within BACOVA_01549at 49.749 kb on + strand, within BACOVA_01549at 49.774 kb on - strand, within BACOVA_01549at 49.775 kb on + strand, within BACOVA_01549at 49.776 kb on - strand, within BACOVA_01549at 49.776 kb on - strand, within BACOVA_01549at 49.784 kb on + strand, within BACOVA_01549at 49.785 kb on - strand, within BACOVA_01549at 49.887 kb on + strand, within BACOVA_01549at 49.955 kb on + strand, within BACOVA_01549at 49.955 kb on + strand, within BACOVA_01549at 49.955 kb on + strand, within BACOVA_01549at 50.099 kb on - strand, within BACOVA_01549at 50.099 kb on - strand, within BACOVA_01549at 50.161 kb on + strand, within BACOVA_01549at 50.163 kb on + strand, within BACOVA_01549at 50.194 kb on + strand, within BACOVA_01549at 50.255 kb on + strand, within BACOVA_01549at 50.255 kb on + strand, within BACOVA_01549at 50.255 kb on + strand, within BACOVA_01549at 50.318 kb on - strand, within BACOVA_01549at 50.318 kb on - strand, within BACOVA_01549

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xyloglucan from tamarind 2.5 mg/mL (C)
remove
46,843 - BACOVA_01545 0.37 +0.1
46,845 + BACOVA_01545 0.37 -0.3
46,858 + BACOVA_01545 0.39 +0.2
46,896 + BACOVA_01545 0.43 -0.2
46,897 - BACOVA_01545 0.44 +0.6
46,987 + BACOVA_01545 0.54 -0.9
46,987 + BACOVA_01545 0.54 +0.5
46,988 - BACOVA_01545 0.55 +0.7
47,086 + BACOVA_01545 0.66 -2.1
47,086 + BACOVA_01545 0.66 -0.5
47,087 - BACOVA_01545 0.67 +0.4
47,208 + BACOVA_01545 0.81 -0.6
47,208 + BACOVA_01545 0.81 +1.2
47,366 - +1.5
47,368 - +0.5
47,368 - +0.3
47,388 + +0.6
47,448 - BACOVA_01546 0.13 +1.1
47,466 + BACOVA_01546 0.20 +0.8
47,512 + BACOVA_01546 0.38 -0.2
47,512 + BACOVA_01546 0.38 -1.0
47,513 - BACOVA_01546 0.39 +0.9
47,518 - BACOVA_01546 0.41 +0.5
47,529 + BACOVA_01546 0.45 +0.3
47,547 + BACOVA_01546 0.52 -2.1
47,548 - BACOVA_01546 0.53 -0.3
47,550 - BACOVA_01546 0.54 -0.7
47,550 - BACOVA_01546 0.54 +1.0
47,552 - BACOVA_01546 0.54 +0.5
47,552 - BACOVA_01546 0.54 +0.8
47,589 - BACOVA_01546 0.69 +0.6
47,626 - BACOVA_01546 0.84 +0.6
47,658 + +1.5
47,771 + -1.0
47,800 - -0.4
47,801 + -0.3
47,801 + +0.4
47,802 - +0.1
47,812 - +2.0
47,812 - +1.1
47,837 - +1.5
47,855 - +1.4
47,862 - +0.0
47,872 - -1.4
48,062 - BACOVA_01548 0.16 +0.2
48,062 - BACOVA_01548 0.16 +0.7
48,062 - BACOVA_01548 0.16 -0.3
48,067 - BACOVA_01548 0.16 +1.3
48,072 - BACOVA_01548 0.17 -1.7
48,087 + BACOVA_01548 0.18 +1.1
48,099 - BACOVA_01548 0.18 +0.2
48,170 - BACOVA_01548 0.23 +0.1
48,172 + BACOVA_01548 0.23 +0.0
48,172 + BACOVA_01548 0.23 -0.4
48,173 - BACOVA_01548 0.23 -1.1
48,175 + BACOVA_01548 0.23 +0.5
48,175 + BACOVA_01548 0.23 -1.7
48,228 - BACOVA_01548 0.27 -0.5
48,230 - BACOVA_01548 0.27 +0.8
48,237 + BACOVA_01548 0.27 -0.4
48,260 + BACOVA_01548 0.29 -1.4
48,286 + BACOVA_01548 0.30 +0.6
48,287 - BACOVA_01548 0.30 -1.3
48,307 + BACOVA_01548 0.32 +0.5
48,309 + BACOVA_01548 0.32 +0.7
48,309 + BACOVA_01548 0.32 -0.6
48,309 + BACOVA_01548 0.32 +0.4
48,309 + BACOVA_01548 0.32 +0.1
48,310 - BACOVA_01548 0.32 -0.9
48,310 - BACOVA_01548 0.32 +1.0
48,310 - BACOVA_01548 0.32 -0.1
48,310 - BACOVA_01548 0.32 +0.2
48,311 + BACOVA_01548 0.32 -2.6
48,311 + BACOVA_01548 0.32 -0.1
48,311 + BACOVA_01548 0.32 +0.3
48,312 - BACOVA_01548 0.32 +0.7
48,315 - BACOVA_01548 0.32 +1.4
48,315 - BACOVA_01548 0.32 -0.9
48,380 - BACOVA_01548 0.36 -0.2
48,396 + BACOVA_01548 0.37 -0.4
48,422 - BACOVA_01548 0.39 -0.3
48,422 - BACOVA_01548 0.39 +0.1
48,525 - BACOVA_01548 0.45 +0.3
48,534 + BACOVA_01548 0.46 -0.1
48,582 - BACOVA_01548 0.49 +0.6
48,601 + BACOVA_01548 0.50 +0.5
48,658 + BACOVA_01548 0.54 +0.1
48,659 - BACOVA_01548 0.54 -0.8
48,682 + BACOVA_01548 0.55 -0.3
48,682 + BACOVA_01548 0.55 +0.9
48,683 - BACOVA_01548 0.55 +0.3
48,740 - BACOVA_01548 0.59 -0.4
48,755 + BACOVA_01548 0.60 -1.0
48,759 + BACOVA_01548 0.60 -0.6
48,760 - BACOVA_01548 0.60 -0.8
48,760 - BACOVA_01548 0.60 +0.2
48,814 + BACOVA_01548 0.64 -0.1
48,899 - BACOVA_01548 0.69 -0.1
49,092 - BACOVA_01548 0.81 +0.7
49,092 - BACOVA_01548 0.81 -0.0
49,102 + BACOVA_01548 0.82 +0.6
49,103 - BACOVA_01548 0.82 -1.6
49,105 - BACOVA_01548 0.82 +1.2
49,179 - BACOVA_01548 0.87 -0.3
49,262 - +0.3
49,262 - -0.3
49,263 + +0.4
49,263 + -1.5
49,263 + +0.7
49,263 + +0.2
49,263 + +0.7
49,264 - -0.3
49,264 - -0.3
49,324 + -0.6
49,324 + -0.7
49,327 + +0.3
49,327 + +0.6
49,327 + +0.3
49,328 - -0.1
49,328 - -0.9
49,442 + +0.5
49,455 - +0.1
49,455 - +0.0
49,456 + -0.3
49,459 + +0.4
49,470 + -0.1
49,471 - +0.2
49,564 + -0.6
49,617 + BACOVA_01549 0.11 +0.4
49,657 - BACOVA_01549 0.14 -0.2
49,735 + BACOVA_01549 0.20 +0.2
49,736 - BACOVA_01549 0.20 -0.1
49,739 + BACOVA_01549 0.20 +1.1
49,747 + BACOVA_01549 0.21 -0.3
49,748 - BACOVA_01549 0.21 +0.1
49,748 - BACOVA_01549 0.21 +1.5
49,749 + BACOVA_01549 0.21 -0.0
49,749 + BACOVA_01549 0.21 +0.7
49,774 - BACOVA_01549 0.23 +0.4
49,775 + BACOVA_01549 0.23 +0.7
49,776 - BACOVA_01549 0.23 -0.9
49,776 - BACOVA_01549 0.23 -0.4
49,784 + BACOVA_01549 0.24 -0.4
49,785 - BACOVA_01549 0.24 +0.9
49,887 + BACOVA_01549 0.32 -0.0
49,955 + BACOVA_01549 0.37 -0.4
49,955 + BACOVA_01549 0.37 +0.4
49,955 + BACOVA_01549 0.37 +1.6
50,099 - BACOVA_01549 0.48 +1.0
50,099 - BACOVA_01549 0.48 -0.8
50,161 + BACOVA_01549 0.52 -1.4
50,163 + BACOVA_01549 0.52 +0.8
50,194 + BACOVA_01549 0.55 +0.4
50,255 + BACOVA_01549 0.59 -0.6
50,255 + BACOVA_01549 0.59 -0.6
50,255 + BACOVA_01549 0.59 +0.4
50,318 - BACOVA_01549 0.64 +0.9
50,318 - BACOVA_01549 0.64 +0.6

Or see this region's nucleotide sequence