Experiment: Xyloglucan from tamarind 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01543 and BACOVA_01544 are separated by 1 nucleotides BACOVA_01544 and BACOVA_01545 are separated by 17 nucleotides BACOVA_01545 and BACOVA_01546 are separated by 52 nucleotides
BACOVA_01543: BACOVA_01543 - hypothetical protein, at 41,900 to 44,467
_01543
BACOVA_01544: BACOVA_01544 - Fibrobacter succinogene major paralogous domain protein, at 44,469 to 46,520
_01544
BACOVA_01545: BACOVA_01545 - hypothetical protein, at 46,538 to 47,362
_01545
BACOVA_01546: BACOVA_01546 - hypothetical protein, at 47,415 to 47,666
_01546
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 43.473 kb on - strand, within BACOVA_01543 at 43.493 kb on + strand, within BACOVA_01543 at 43.494 kb on - strand, within BACOVA_01543 at 43.519 kb on + strand, within BACOVA_01543 at 43.519 kb on + strand, within BACOVA_01543 at 43.525 kb on + strand, within BACOVA_01543 at 43.525 kb on + strand, within BACOVA_01543 at 43.525 kb on + strand, within BACOVA_01543 at 43.526 kb on - strand, within BACOVA_01543 at 43.563 kb on - strand, within BACOVA_01543 at 43.574 kb on + strand, within BACOVA_01543 at 43.575 kb on - strand, within BACOVA_01543 at 43.589 kb on - strand, within BACOVA_01543 at 43.610 kb on - strand, within BACOVA_01543 at 43.640 kb on + strand, within BACOVA_01543 at 43.640 kb on + strand, within BACOVA_01543 at 43.641 kb on - strand, within BACOVA_01543 at 43.641 kb on - strand, within BACOVA_01543 at 43.641 kb on - strand, within BACOVA_01543 at 43.677 kb on + strand, within BACOVA_01543 at 43.683 kb on + strand, within BACOVA_01543 at 43.693 kb on - strand, within BACOVA_01543 at 43.733 kb on + strand, within BACOVA_01543 at 43.733 kb on + strand, within BACOVA_01543 at 43.739 kb on + strand, within BACOVA_01543 at 43.741 kb on + strand, within BACOVA_01543 at 43.816 kb on + strand, within BACOVA_01543 at 43.817 kb on - strand, within BACOVA_01543 at 43.817 kb on - strand, within BACOVA_01543 at 43.817 kb on - strand, within BACOVA_01543 at 43.817 kb on - strand, within BACOVA_01543 at 43.852 kb on + strand, within BACOVA_01543 at 43.852 kb on + strand, within BACOVA_01543 at 43.853 kb on - strand, within BACOVA_01543 at 43.883 kb on + strand, within BACOVA_01543 at 43.898 kb on + strand, within BACOVA_01543 at 43.898 kb on + strand, within BACOVA_01543 at 43.898 kb on + strand, within BACOVA_01543 at 43.899 kb on - strand, within BACOVA_01543 at 43.899 kb on - strand, within BACOVA_01543 at 43.922 kb on - strand, within BACOVA_01543 at 44.029 kb on - strand, within BACOVA_01543 at 44.029 kb on - strand, within BACOVA_01543 at 44.029 kb on - strand, within BACOVA_01543 at 44.029 kb on - strand, within BACOVA_01543 at 44.084 kb on + strand, within BACOVA_01543 at 44.098 kb on - strand, within BACOVA_01543 at 44.142 kb on + strand, within BACOVA_01543 at 44.157 kb on + strand, within BACOVA_01543 at 44.202 kb on + strand, within BACOVA_01543 at 44.232 kb on - strand at 44.232 kb on - strand at 44.254 kb on + strand at 44.354 kb on + strand at 44.382 kb on + strand at 44.393 kb on - strand at 44.400 kb on - strand at 44.400 kb on - strand at 44.411 kb on + strand at 44.415 kb on - strand at 44.423 kb on + strand at 44.423 kb on + strand at 44.451 kb on - strand at 44.488 kb on - strand at 44.520 kb on + strand at 44.521 kb on - strand at 44.522 kb on + strand at 44.547 kb on + strand at 44.547 kb on + strand at 44.550 kb on + strand at 44.555 kb on + strand at 44.555 kb on + strand at 44.555 kb on + strand at 44.556 kb on - strand at 44.567 kb on + strand at 44.568 kb on - strand at 44.568 kb on - strand at 44.580 kb on - strand at 44.580 kb on - strand at 44.609 kb on - strand at 44.610 kb on + strand at 44.611 kb on - strand at 44.633 kb on + strand at 44.642 kb on + strand at 44.643 kb on - strand at 44.652 kb on + strand at 44.655 kb on + strand at 44.655 kb on + strand at 44.656 kb on - strand at 44.683 kb on + strand, within BACOVA_01544 at 44.683 kb on + strand, within BACOVA_01544 at 44.683 kb on + strand, within BACOVA_01544 at 44.683 kb on + strand, within BACOVA_01544 at 44.684 kb on - strand, within BACOVA_01544 at 44.687 kb on + strand, within BACOVA_01544 at 44.711 kb on - strand, within BACOVA_01544 at 44.759 kb on - strand, within BACOVA_01544 at 44.761 kb on + strand, within BACOVA_01544 at 44.837 kb on + strand, within BACOVA_01544 at 44.844 kb on + strand, within BACOVA_01544 at 44.845 kb on - strand, within BACOVA_01544 at 44.864 kb on + strand, within BACOVA_01544 at 44.866 kb on + strand, within BACOVA_01544 at 44.866 kb on + strand, within BACOVA_01544 at 44.866 kb on + strand, within BACOVA_01544 at 44.866 kb on + strand, within BACOVA_01544 at 44.885 kb on + strand, within BACOVA_01544 at 44.924 kb on + strand, within BACOVA_01544 at 44.924 kb on + strand, within BACOVA_01544 at 44.925 kb on - strand, within BACOVA_01544 at 44.941 kb on - strand, within BACOVA_01544 at 44.941 kb on - strand, within BACOVA_01544 at 44.943 kb on - strand, within BACOVA_01544 at 44.945 kb on + strand, within BACOVA_01544 at 44.946 kb on + strand, within BACOVA_01544 at 44.946 kb on - strand, within BACOVA_01544 at 44.948 kb on + strand, within BACOVA_01544 at 45.092 kb on + strand, within BACOVA_01544 at 45.096 kb on - strand, within BACOVA_01544 at 45.112 kb on + strand, within BACOVA_01544 at 45.112 kb on + strand, within BACOVA_01544 at 45.113 kb on - strand, within BACOVA_01544 at 45.113 kb on - strand, within BACOVA_01544 at 45.113 kb on - strand, within BACOVA_01544 at 45.113 kb on - strand, within BACOVA_01544 at 45.116 kb on + strand, within BACOVA_01544 at 45.117 kb on - strand, within BACOVA_01544 at 45.117 kb on - strand, within BACOVA_01544 at 45.121 kb on + strand, within BACOVA_01544 at 45.121 kb on + strand, within BACOVA_01544 at 45.121 kb on + strand, within BACOVA_01544 at 45.121 kb on + strand, within BACOVA_01544 at 45.161 kb on + strand, within BACOVA_01544 at 45.255 kb on + strand, within BACOVA_01544 at 45.256 kb on - strand, within BACOVA_01544 at 45.285 kb on + strand, within BACOVA_01544 at 45.286 kb on - strand, within BACOVA_01544 at 45.294 kb on - strand, within BACOVA_01544 at 45.294 kb on - strand, within BACOVA_01544 at 45.295 kb on + strand, within BACOVA_01544 at 45.295 kb on + strand, within BACOVA_01544 at 45.295 kb on + strand, within BACOVA_01544 at 45.295 kb on + strand, within BACOVA_01544 at 45.336 kb on - strand, within BACOVA_01544 at 45.355 kb on - strand, within BACOVA_01544 at 45.383 kb on + strand, within BACOVA_01544 at 45.459 kb on + strand, within BACOVA_01544 at 45.461 kb on + strand, within BACOVA_01544 at 45.462 kb on - strand, within BACOVA_01544 at 45.462 kb on - strand, within BACOVA_01544 at 45.462 kb on - strand, within BACOVA_01544 at 45.465 kb on + strand, within BACOVA_01544 at 45.465 kb on + strand, within BACOVA_01544 at 45.483 kb on + strand, within BACOVA_01544 at 45.490 kb on + strand, within BACOVA_01544 at 45.491 kb on - strand, within BACOVA_01544 at 45.507 kb on + strand, within BACOVA_01544 at 45.538 kb on - strand, within BACOVA_01544 at 45.606 kb on + strand, within BACOVA_01544 at 45.624 kb on - strand, within BACOVA_01544 at 45.659 kb on + strand, within BACOVA_01544 at 45.676 kb on - strand, within BACOVA_01544 at 45.681 kb on + strand, within BACOVA_01544 at 45.686 kb on + strand, within BACOVA_01544 at 45.687 kb on - strand, within BACOVA_01544 at 45.687 kb on - strand, within BACOVA_01544 at 45.705 kb on + strand, within BACOVA_01544 at 45.706 kb on - strand, within BACOVA_01544 at 45.716 kb on + strand, within BACOVA_01544 at 45.824 kb on + strand, within BACOVA_01544 at 45.844 kb on + strand, within BACOVA_01544 at 45.845 kb on - strand, within BACOVA_01544 at 45.912 kb on + strand, within BACOVA_01544 at 45.913 kb on - strand, within BACOVA_01544 at 45.952 kb on + strand, within BACOVA_01544 at 45.953 kb on - strand, within BACOVA_01544 at 45.953 kb on - strand, within BACOVA_01544 at 46.042 kb on + strand, within BACOVA_01544 at 46.042 kb on + strand, within BACOVA_01544 at 46.067 kb on + strand, within BACOVA_01544 at 46.069 kb on + strand, within BACOVA_01544 at 46.094 kb on + strand, within BACOVA_01544 at 46.095 kb on - strand, within BACOVA_01544 at 46.164 kb on + strand, within BACOVA_01544 at 46.167 kb on - strand, within BACOVA_01544 at 46.175 kb on + strand, within BACOVA_01544 at 46.197 kb on + strand, within BACOVA_01544 at 46.207 kb on + strand, within BACOVA_01544 at 46.253 kb on + strand, within BACOVA_01544 at 46.254 kb on - strand, within BACOVA_01544 at 46.254 kb on - strand, within BACOVA_01544 at 46.255 kb on + strand, within BACOVA_01544 at 46.255 kb on + strand, within BACOVA_01544 at 46.256 kb on - strand, within BACOVA_01544 at 46.288 kb on + strand, within BACOVA_01544 at 46.291 kb on + strand, within BACOVA_01544 at 46.325 kb on - strand at 46.397 kb on + strand at 46.494 kb on + strand at 46.494 kb on + strand at 46.494 kb on + strand at 46.496 kb on + strand at 46.497 kb on - strand at 46.497 kb on - strand at 46.498 kb on + strand at 46.508 kb on - strand at 46.508 kb on - strand at 46.508 kb on - strand at 46.564 kb on + strand at 46.608 kb on - strand at 46.696 kb on + strand, within BACOVA_01545 at 46.697 kb on - strand, within BACOVA_01545 at 46.707 kb on + strand, within BACOVA_01545 at 46.843 kb on - strand, within BACOVA_01545 at 46.845 kb on + strand, within BACOVA_01545 at 46.858 kb on + strand, within BACOVA_01545 at 46.896 kb on + strand, within BACOVA_01545 at 46.897 kb on - strand, within BACOVA_01545 at 46.987 kb on + strand, within BACOVA_01545 at 46.987 kb on + strand, within BACOVA_01545 at 46.988 kb on - strand, within BACOVA_01545 at 47.086 kb on + strand, within BACOVA_01545 at 47.086 kb on + strand, within BACOVA_01545 at 47.087 kb on - strand, within BACOVA_01545 at 47.208 kb on + strand, within BACOVA_01545 at 47.208 kb on + strand, within BACOVA_01545 at 47.366 kb on - strand at 47.368 kb on - strand at 47.368 kb on - strand at 47.388 kb on + strand at 47.448 kb on - strand, within BACOVA_01546 at 47.466 kb on + strand, within BACOVA_01546 at 47.512 kb on + strand, within BACOVA_01546 at 47.512 kb on + strand, within BACOVA_01546 at 47.513 kb on - strand, within BACOVA_01546 at 47.518 kb on - strand, within BACOVA_01546
Per-strain Table
Position Strand Gene LocusTag Fraction Xyloglucan from tamarind 2.5 mg/mL (C) remove 43,473 - BACOVA_01543 0.61 -0.7 43,493 + BACOVA_01543 0.62 +1.0 43,494 - BACOVA_01543 0.62 +0.8 43,519 + BACOVA_01543 0.63 -1.4 43,519 + BACOVA_01543 0.63 -1.7 43,525 + BACOVA_01543 0.63 +1.3 43,525 + BACOVA_01543 0.63 +1.1 43,525 + BACOVA_01543 0.63 +0.1 43,526 - BACOVA_01543 0.63 +0.8 43,563 - BACOVA_01543 0.65 +0.3 43,574 + BACOVA_01543 0.65 -0.7 43,575 - BACOVA_01543 0.65 -0.4 43,589 - BACOVA_01543 0.66 +0.7 43,610 - BACOVA_01543 0.67 +0.1 43,640 + BACOVA_01543 0.68 +1.3 43,640 + BACOVA_01543 0.68 +0.1 43,641 - BACOVA_01543 0.68 +0.7 43,641 - BACOVA_01543 0.68 +0.1 43,641 - BACOVA_01543 0.68 -0.0 43,677 + BACOVA_01543 0.69 -0.7 43,683 + BACOVA_01543 0.69 -0.3 43,693 - BACOVA_01543 0.70 +2.4 43,733 + BACOVA_01543 0.71 +0.1 43,733 + BACOVA_01543 0.71 -0.9 43,739 + BACOVA_01543 0.72 -0.7 43,741 + BACOVA_01543 0.72 +0.4 43,816 + BACOVA_01543 0.75 +0.7 43,817 - BACOVA_01543 0.75 +1.2 43,817 - BACOVA_01543 0.75 -0.1 43,817 - BACOVA_01543 0.75 +0.2 43,817 - BACOVA_01543 0.75 +0.7 43,852 + BACOVA_01543 0.76 +0.7 43,852 + BACOVA_01543 0.76 -0.7 43,853 - BACOVA_01543 0.76 -1.6 43,883 + BACOVA_01543 0.77 -0.1 43,898 + BACOVA_01543 0.78 -1.3 43,898 + BACOVA_01543 0.78 +0.2 43,898 + BACOVA_01543 0.78 -0.9 43,899 - BACOVA_01543 0.78 +0.1 43,899 - BACOVA_01543 0.78 +0.1 43,922 - BACOVA_01543 0.79 -0.6 44,029 - BACOVA_01543 0.83 -0.7 44,029 - BACOVA_01543 0.83 +0.6 44,029 - BACOVA_01543 0.83 +0.2 44,029 - BACOVA_01543 0.83 -1.1 44,084 + BACOVA_01543 0.85 -1.1 44,098 - BACOVA_01543 0.86 +1.6 44,142 + BACOVA_01543 0.87 -0.2 44,157 + BACOVA_01543 0.88 -0.1 44,202 + BACOVA_01543 0.90 -0.4 44,232 - -0.3 44,232 - -1.4 44,254 + -0.2 44,354 + -1.6 44,382 + +0.4 44,393 - -0.9 44,400 - +0.5 44,400 - +0.6 44,411 + +0.2 44,415 - -0.3 44,423 + +1.0 44,423 + -0.4 44,451 - +0.8 44,488 - +1.0 44,520 + +0.1 44,521 - +1.4 44,522 + +1.3 44,547 + -1.3 44,547 + -0.0 44,550 + -0.7 44,555 + -0.3 44,555 + +0.3 44,555 + -0.8 44,556 - -0.3 44,567 + +0.4 44,568 - -1.1 44,568 - +0.4 44,580 - +0.9 44,580 - +0.8 44,609 - -1.3 44,610 + +0.4 44,611 - +0.4 44,633 + -0.4 44,642 + -0.8 44,643 - -0.1 44,652 + +0.4 44,655 + -0.1 44,655 + +0.1 44,656 - -0.8 44,683 + BACOVA_01544 0.10 +0.1 44,683 + BACOVA_01544 0.10 -0.1 44,683 + BACOVA_01544 0.10 +0.7 44,683 + BACOVA_01544 0.10 +0.4 44,684 - BACOVA_01544 0.10 +1.0 44,687 + BACOVA_01544 0.11 -3.3 44,711 - BACOVA_01544 0.12 +0.8 44,759 - BACOVA_01544 0.14 +1.3 44,761 + BACOVA_01544 0.14 -0.6 44,837 + BACOVA_01544 0.18 +0.1 44,844 + BACOVA_01544 0.18 +0.4 44,845 - BACOVA_01544 0.18 +1.3 44,864 + BACOVA_01544 0.19 +0.8 44,866 + BACOVA_01544 0.19 +0.8 44,866 + BACOVA_01544 0.19 +0.7 44,866 + BACOVA_01544 0.19 -0.2 44,866 + BACOVA_01544 0.19 -0.5 44,885 + BACOVA_01544 0.20 -1.4 44,924 + BACOVA_01544 0.22 +0.1 44,924 + BACOVA_01544 0.22 -0.1 44,925 - BACOVA_01544 0.22 -1.1 44,941 - BACOVA_01544 0.23 +0.3 44,941 - BACOVA_01544 0.23 +0.3 44,943 - BACOVA_01544 0.23 +0.4 44,945 + BACOVA_01544 0.23 -0.2 44,946 + BACOVA_01544 0.23 +0.2 44,946 - BACOVA_01544 0.23 +0.0 44,948 + BACOVA_01544 0.23 +0.4 45,092 + BACOVA_01544 0.30 -0.4 45,096 - BACOVA_01544 0.31 +0.9 45,112 + BACOVA_01544 0.31 +0.4 45,112 + BACOVA_01544 0.31 +0.6 45,113 - BACOVA_01544 0.31 +1.2 45,113 - BACOVA_01544 0.31 +0.6 45,113 - BACOVA_01544 0.31 -2.2 45,113 - BACOVA_01544 0.31 -0.1 45,116 + BACOVA_01544 0.32 -0.9 45,117 - BACOVA_01544 0.32 +1.4 45,117 - BACOVA_01544 0.32 +1.7 45,121 + BACOVA_01544 0.32 +0.0 45,121 + BACOVA_01544 0.32 -0.6 45,121 + BACOVA_01544 0.32 +0.2 45,121 + BACOVA_01544 0.32 +0.3 45,161 + BACOVA_01544 0.34 +0.3 45,255 + BACOVA_01544 0.38 -1.0 45,256 - BACOVA_01544 0.38 +1.0 45,285 + BACOVA_01544 0.40 -0.6 45,286 - BACOVA_01544 0.40 +0.3 45,294 - BACOVA_01544 0.40 -0.0 45,294 - BACOVA_01544 0.40 +0.2 45,295 + BACOVA_01544 0.40 -2.1 45,295 + BACOVA_01544 0.40 -0.6 45,295 + BACOVA_01544 0.40 -0.6 45,295 + BACOVA_01544 0.40 +0.6 45,336 - BACOVA_01544 0.42 -0.2 45,355 - BACOVA_01544 0.43 -1.0 45,383 + BACOVA_01544 0.45 -1.1 45,459 + BACOVA_01544 0.48 -1.4 45,461 + BACOVA_01544 0.48 +0.8 45,462 - BACOVA_01544 0.48 +0.7 45,462 - BACOVA_01544 0.48 +0.6 45,462 - BACOVA_01544 0.48 +0.3 45,465 + BACOVA_01544 0.49 -1.4 45,465 + BACOVA_01544 0.49 -0.3 45,483 + BACOVA_01544 0.49 +0.5 45,490 + BACOVA_01544 0.50 +0.2 45,491 - BACOVA_01544 0.50 -0.1 45,507 + BACOVA_01544 0.51 +0.3 45,538 - BACOVA_01544 0.52 +0.6 45,606 + BACOVA_01544 0.55 +0.9 45,624 - BACOVA_01544 0.56 +0.3 45,659 + BACOVA_01544 0.58 -0.4 45,676 - BACOVA_01544 0.59 +0.7 45,681 + BACOVA_01544 0.59 -0.1 45,686 + BACOVA_01544 0.59 -1.2 45,687 - BACOVA_01544 0.59 -0.7 45,687 - BACOVA_01544 0.59 +0.2 45,705 + BACOVA_01544 0.60 -0.4 45,706 - BACOVA_01544 0.60 -0.4 45,716 + BACOVA_01544 0.61 -0.4 45,824 + BACOVA_01544 0.66 -1.1 45,844 + BACOVA_01544 0.67 +1.9 45,845 - BACOVA_01544 0.67 +0.7 45,912 + BACOVA_01544 0.70 +0.1 45,913 - BACOVA_01544 0.70 +0.2 45,952 + BACOVA_01544 0.72 -0.4 45,953 - BACOVA_01544 0.72 +0.4 45,953 - BACOVA_01544 0.72 +0.9 46,042 + BACOVA_01544 0.77 +0.5 46,042 + BACOVA_01544 0.77 +0.1 46,067 + BACOVA_01544 0.78 -1.0 46,069 + BACOVA_01544 0.78 +0.8 46,094 + BACOVA_01544 0.79 -0.5 46,095 - BACOVA_01544 0.79 +0.7 46,164 + BACOVA_01544 0.83 +0.3 46,167 - BACOVA_01544 0.83 +1.2 46,175 + BACOVA_01544 0.83 -2.0 46,197 + BACOVA_01544 0.84 +0.7 46,207 + BACOVA_01544 0.85 +0.1 46,253 + BACOVA_01544 0.87 +0.4 46,254 - BACOVA_01544 0.87 -1.6 46,254 - BACOVA_01544 0.87 +0.4 46,255 + BACOVA_01544 0.87 -1.3 46,255 + BACOVA_01544 0.87 -1.4 46,256 - BACOVA_01544 0.87 +0.4 46,288 + BACOVA_01544 0.89 +0.1 46,291 + BACOVA_01544 0.89 -0.2 46,325 - -0.1 46,397 + -0.7 46,494 + -0.2 46,494 + -0.6 46,494 + -0.3 46,496 + +0.8 46,497 - -0.7 46,497 - -0.3 46,498 + +0.7 46,508 - +1.0 46,508 - +0.9 46,508 - +0.8 46,564 + +0.4 46,608 - +0.0 46,696 + BACOVA_01545 0.19 -0.8 46,697 - BACOVA_01545 0.19 +0.8 46,707 + BACOVA_01545 0.20 +0.5 46,843 - BACOVA_01545 0.37 +0.1 46,845 + BACOVA_01545 0.37 -0.3 46,858 + BACOVA_01545 0.39 +0.2 46,896 + BACOVA_01545 0.43 -0.2 46,897 - BACOVA_01545 0.44 +0.6 46,987 + BACOVA_01545 0.54 -0.9 46,987 + BACOVA_01545 0.54 +0.5 46,988 - BACOVA_01545 0.55 +0.7 47,086 + BACOVA_01545 0.66 -2.1 47,086 + BACOVA_01545 0.66 -0.5 47,087 - BACOVA_01545 0.67 +0.4 47,208 + BACOVA_01545 0.81 -0.6 47,208 + BACOVA_01545 0.81 +1.2 47,366 - +1.5 47,368 - +0.5 47,368 - +0.3 47,388 + +0.6 47,448 - BACOVA_01546 0.13 +1.1 47,466 + BACOVA_01546 0.20 +0.8 47,512 + BACOVA_01546 0.38 -0.2 47,512 + BACOVA_01546 0.38 -1.0 47,513 - BACOVA_01546 0.39 +0.9 47,518 - BACOVA_01546 0.41 +0.5
Or see this region's nucleotide sequence