Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF898

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF897 and GFF898 are separated by 28 nucleotidesGFF898 and GFF899 overlap by 4 nucleotidesGFF899 and GFF900 are separated by 13 nucleotides GFF897 - Tricarboxylate transport protein TctC, at 626,195 to 627,160 GFF897 GFF898 - Acetyl-CoA acetyltransferase, at 627,189 to 628,370 GFF898 GFF899 - hypothetical protein, at 628,367 to 628,819 GFF899 GFF900 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 628,833 to 630,974 GFF900 Position (kb) 627 628 629Strain fitness (log2 ratio) -1 0 1at 626.193 kb on + strandat 626.194 kb on + strandat 626.194 kb on + strandat 626.194 kb on + strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.195 kb on - strandat 626.196 kb on - strandat 626.303 kb on + strand, within GFF897at 626.303 kb on + strand, within GFF897at 626.303 kb on + strand, within GFF897at 626.304 kb on - strand, within GFF897at 626.436 kb on + strand, within GFF897at 626.436 kb on + strand, within GFF897at 626.558 kb on + strand, within GFF897at 626.558 kb on + strand, within GFF897at 626.558 kb on + strand, within GFF897at 626.559 kb on - strand, within GFF897at 626.559 kb on - strand, within GFF897at 626.610 kb on - strand, within GFF897at 626.647 kb on + strand, within GFF897at 626.647 kb on + strand, within GFF897at 626.647 kb on + strand, within GFF897at 626.647 kb on + strand, within GFF897at 626.647 kb on + strand, within GFF897at 626.647 kb on + strand, within GFF897at 626.648 kb on - strand, within GFF897at 626.648 kb on - strand, within GFF897at 626.648 kb on - strand, within GFF897at 626.648 kb on - strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.651 kb on + strand, within GFF897at 626.652 kb on - strand, within GFF897at 626.652 kb on - strand, within GFF897at 626.652 kb on - strand, within GFF897at 626.652 kb on - strand, within GFF897at 626.652 kb on - strand, within GFF897at 626.652 kb on - strand, within GFF897at 626.928 kb on - strand, within GFF897at 626.928 kb on - strand, within GFF897at 626.928 kb on - strand, within GFF897at 626.928 kb on - strand, within GFF897at 626.962 kb on + strand, within GFF897at 626.962 kb on + strand, within GFF897at 626.963 kb on - strand, within GFF897at 626.963 kb on - strand, within GFF897at 626.963 kb on - strand, within GFF897at 626.963 kb on - strand, within GFF897at 626.963 kb on - strand, within GFF897at 627.050 kb on + strand, within GFF897at 627.050 kb on + strand, within GFF897at 627.051 kb on - strand, within GFF897at 627.083 kb on + strandat 627.083 kb on + strandat 627.083 kb on + strandat 627.084 kb on - strandat 627.107 kb on + strandat 627.378 kb on + strand, within GFF898at 627.378 kb on + strand, within GFF898at 627.379 kb on - strand, within GFF898at 627.393 kb on - strand, within GFF898at 627.402 kb on + strand, within GFF898at 627.403 kb on - strand, within GFF898at 627.403 kb on - strand, within GFF898at 627.403 kb on - strand, within GFF898at 627.639 kb on + strand, within GFF898at 627.660 kb on + strand, within GFF898at 627.661 kb on - strand, within GFF898at 627.661 kb on - strand, within GFF898at 627.751 kb on - strand, within GFF898at 627.751 kb on - strand, within GFF898at 627.816 kb on + strand, within GFF898at 627.817 kb on + strand, within GFF898at 627.817 kb on - strand, within GFF898at 627.817 kb on - strand, within GFF898at 627.946 kb on + strand, within GFF898at 627.947 kb on - strand, within GFF898at 628.008 kb on + strand, within GFF898at 628.008 kb on + strand, within GFF898at 628.056 kb on + strand, within GFF898at 628.056 kb on + strand, within GFF898at 628.056 kb on + strand, within GFF898at 628.057 kb on - strand, within GFF898at 628.057 kb on - strand, within GFF898at 628.057 kb on - strand, within GFF898at 628.057 kb on - strand, within GFF898at 628.057 kb on - strand, within GFF898at 628.057 kb on - strand, within GFF898at 628.230 kb on + strand, within GFF898at 628.231 kb on - strand, within GFF898at 628.237 kb on - strand, within GFF898at 628.329 kb on + strandat 628.329 kb on + strandat 628.329 kb on + strandat 628.330 kb on - strandat 628.330 kb on - strandat 628.427 kb on + strand, within GFF899at 628.605 kb on - strand, within GFF899at 628.658 kb on + strand, within GFF899at 628.658 kb on + strand, within GFF899at 628.805 kb on - strandat 628.969 kb on - strandat 628.987 kb on + strandat 628.990 kb on + strandat 628.991 kb on - strandat 629.307 kb on + strand, within GFF900at 629.307 kb on + strand, within GFF900

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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626,193 + -0.4
626,194 + -1.1
626,194 + -0.0
626,194 + +0.2
626,195 - +0.0
626,195 - -1.6
626,195 - +0.2
626,195 - -0.3
626,195 - +0.4
626,195 - -0.0
626,195 - +0.1
626,195 - -0.2
626,196 - -0.2
626,303 + GFF897 0.11 -0.1
626,303 + GFF897 0.11 -0.1
626,303 + GFF897 0.11 +0.2
626,304 - GFF897 0.11 +0.1
626,436 + GFF897 0.25 -0.7
626,436 + GFF897 0.25 -0.0
626,558 + GFF897 0.38 -0.5
626,558 + GFF897 0.38 -0.4
626,558 + GFF897 0.38 -0.0
626,559 - GFF897 0.38 -0.0
626,559 - GFF897 0.38 +0.4
626,610 - GFF897 0.43 -0.5
626,647 + GFF897 0.47 +0.3
626,647 + GFF897 0.47 -0.2
626,647 + GFF897 0.47 -0.4
626,647 + GFF897 0.47 +0.0
626,647 + GFF897 0.47 -0.9
626,647 + GFF897 0.47 -0.4
626,648 - GFF897 0.47 -0.3
626,648 - GFF897 0.47 +1.4
626,648 - GFF897 0.47 +1.4
626,648 - GFF897 0.47 -1.2
626,651 + GFF897 0.47 +0.4
626,651 + GFF897 0.47 -0.1
626,651 + GFF897 0.47 +0.4
626,651 + GFF897 0.47 +0.2
626,651 + GFF897 0.47 -0.4
626,651 + GFF897 0.47 -0.3
626,651 + GFF897 0.47 +0.1
626,652 - GFF897 0.47 -0.4
626,652 - GFF897 0.47 -0.1
626,652 - GFF897 0.47 -0.4
626,652 - GFF897 0.47 -0.1
626,652 - GFF897 0.47 +0.8
626,652 - GFF897 0.47 +0.4
626,928 - GFF897 0.76 -0.2
626,928 - GFF897 0.76 +1.1
626,928 - GFF897 0.76 +0.4
626,928 - GFF897 0.76 +0.7
626,962 + GFF897 0.79 -0.1
626,962 + GFF897 0.79 +1.0
626,963 - GFF897 0.80 -0.8
626,963 - GFF897 0.80 +0.8
626,963 - GFF897 0.80 +0.4
626,963 - GFF897 0.80 +1.6
626,963 - GFF897 0.80 +1.0
627,050 + GFF897 0.89 +1.6
627,050 + GFF897 0.89 +0.1
627,051 - GFF897 0.89 +0.5
627,083 + +0.2
627,083 + -0.2
627,083 + +0.7
627,084 - +0.1
627,107 + -0.1
627,378 + GFF898 0.16 -0.1
627,378 + GFF898 0.16 -0.1
627,379 - GFF898 0.16 +0.0
627,393 - GFF898 0.17 +0.4
627,402 + GFF898 0.18 -0.3
627,403 - GFF898 0.18 -0.5
627,403 - GFF898 0.18 -0.4
627,403 - GFF898 0.18 -0.1
627,639 + GFF898 0.38 -0.6
627,660 + GFF898 0.40 +0.4
627,661 - GFF898 0.40 +0.7
627,661 - GFF898 0.40 +0.5
627,751 - GFF898 0.48 +0.2
627,751 - GFF898 0.48 +0.3
627,816 + GFF898 0.53 -0.4
627,817 + GFF898 0.53 +0.2
627,817 - GFF898 0.53 +0.0
627,817 - GFF898 0.53 +0.4
627,946 + GFF898 0.64 +0.7
627,947 - GFF898 0.64 +0.1
628,008 + GFF898 0.69 -0.3
628,008 + GFF898 0.69 +0.0
628,056 + GFF898 0.73 +0.6
628,056 + GFF898 0.73 +0.0
628,056 + GFF898 0.73 -0.4
628,057 - GFF898 0.73 +0.1
628,057 - GFF898 0.73 +0.1
628,057 - GFF898 0.73 +0.1
628,057 - GFF898 0.73 +1.6
628,057 - GFF898 0.73 +0.2
628,057 - GFF898 0.73 -1.1
628,230 + GFF898 0.88 +1.0
628,231 - GFF898 0.88 +0.5
628,237 - GFF898 0.89 -0.3
628,329 + -0.3
628,329 + +0.2
628,329 + +0.7
628,330 - -0.9
628,330 - +0.6
628,427 + GFF899 0.13 -0.6
628,605 - GFF899 0.53 +0.9
628,658 + GFF899 0.64 +0.1
628,658 + GFF899 0.64 +0.2
628,805 - +0.2
628,969 - -0.1
628,987 + +0.4
628,990 + +0.3
628,991 - -0.4
629,307 + GFF900 0.22 -0.8
629,307 + GFF900 0.22 -1.2

Or see this region's nucleotide sequence