Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF894 and GFF895 are separated by 834 nucleotides GFF895 and GFF896 are separated by 402 nucleotides
GFF894 - Mobile element protein, at 621,203 to 622,105
GFF894
GFF895 - Mobile element protein, at 622,940 to 623,956
GFF895
GFF896 - Response regulator of zinc sigma-54-dependent two-component system, at 624,359 to 626,038
GFF896
Position (kb) 622
623
624 Strain fitness (log2 ratio) -2
-1
0
1 at 622.056 kb on + strand at 622.264 kb on + strand at 622.265 kb on - strand at 622.265 kb on - strand at 622.265 kb on - strand at 622.272 kb on + strand at 622.272 kb on + strand at 622.273 kb on - strand at 622.273 kb on - strand at 622.316 kb on + strand at 622.316 kb on + strand at 622.316 kb on + strand at 622.316 kb on + strand at 622.316 kb on + strand at 622.316 kb on + strand at 622.316 kb on + strand at 622.317 kb on - strand at 622.317 kb on - strand at 622.434 kb on + strand at 622.434 kb on + strand at 622.434 kb on + strand at 622.435 kb on - strand at 622.435 kb on - strand at 622.435 kb on - strand at 622.442 kb on + strand at 622.442 kb on + strand at 622.442 kb on + strand at 622.442 kb on + strand at 622.443 kb on - strand at 622.443 kb on - strand at 622.619 kb on + strand at 622.620 kb on - strand at 622.719 kb on + strand at 622.719 kb on + strand at 622.719 kb on + strand at 622.835 kb on - strand at 622.835 kb on - strand at 622.924 kb on + strand at 622.925 kb on - strand at 623.343 kb on + strand, within GFF895 at 623.343 kb on + strand, within GFF895 at 623.343 kb on + strand, within GFF895 at 623.343 kb on + strand, within GFF895 at 623.343 kb on + strand, within GFF895 at 623.343 kb on + strand, within GFF895 at 623.344 kb on - strand, within GFF895 at 623.344 kb on - strand, within GFF895 at 623.344 kb on - strand, within GFF895 at 623.366 kb on + strand, within GFF895 at 623.366 kb on + strand, within GFF895 at 623.366 kb on + strand, within GFF895 at 623.366 kb on + strand, within GFF895 at 623.366 kb on + strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.367 kb on - strand, within GFF895 at 623.486 kb on + strand, within GFF895 at 623.487 kb on - strand, within GFF895 at 623.487 kb on - strand, within GFF895 at 623.487 kb on - strand, within GFF895 at 623.596 kb on - strand, within GFF895 at 623.596 kb on - strand, within GFF895 at 623.596 kb on - strand, within GFF895 at 623.737 kb on + strand, within GFF895 at 623.738 kb on - strand, within GFF895 at 623.738 kb on - strand, within GFF895 at 623.738 kb on - strand, within GFF895 at 623.738 kb on - strand, within GFF895 at 623.738 kb on - strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.753 kb on + strand, within GFF895 at 623.754 kb on - strand, within GFF895 at 623.754 kb on - strand, within GFF895 at 623.843 kb on - strand, within GFF895 at 623.843 kb on - strand, within GFF895 at 623.924 kb on + strand at 623.924 kb on + strand at 623.925 kb on - strand at 623.925 kb on - strand at 623.925 kb on - strand at 623.925 kb on - strand at 623.925 kb on - strand at 624.016 kb on + strand at 624.016 kb on + strand at 624.016 kb on + strand at 624.017 kb on - strand at 624.017 kb on - strand at 624.017 kb on - strand at 624.035 kb on + strand at 624.035 kb on + strand at 624.035 kb on + strand at 624.036 kb on - strand at 624.036 kb on - strand at 624.036 kb on - strand at 624.147 kb on - strand at 624.147 kb on - strand at 624.147 kb on - strand at 624.147 kb on - strand at 624.147 kb on - strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.148 kb on + strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.149 kb on - strand at 624.168 kb on - strand at 624.168 kb on - strand at 624.209 kb on + strand at 624.209 kb on + strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.210 kb on - strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.211 kb on + strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.212 kb on - strand at 624.224 kb on - strand at 624.224 kb on - strand at 624.284 kb on + strand at 624.292 kb on + strand at 624.443 kb on + strand at 624.443 kb on + strand at 624.443 kb on - strand at 624.456 kb on - strand at 624.706 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.730 kb on + strand, within GFF896 at 624.731 kb on - strand, within GFF896 at 624.731 kb on - strand, within GFF896 at 624.731 kb on - strand, within GFF896 at 624.731 kb on - strand, within GFF896 at 624.731 kb on - strand, within GFF896 at 624.731 kb on - strand, within GFF896 at 624.810 kb on + strand, within GFF896 at 624.811 kb on - strand, within GFF896 at 624.811 kb on - strand, within GFF896 at 624.930 kb on + strand, within GFF896 at 624.930 kb on + strand, within GFF896 at 624.930 kb on + strand, within GFF896 at 624.930 kb on + strand, within GFF896 at 624.930 kb on + strand, within GFF896 at 624.931 kb on - strand, within GFF896 at 624.931 kb on - strand, within GFF896 at 624.931 kb on - strand, within GFF896
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 622,056 + -0.8 622,264 + +0.5 622,265 - -0.3 622,265 - -0.5 622,265 - -0.3 622,272 + +0.5 622,272 + +0.3 622,273 - -0.2 622,273 - -0.3 622,316 + +0.5 622,316 + -0.2 622,316 + +0.4 622,316 + -0.2 622,316 + -1.2 622,316 + -0.4 622,316 + -0.6 622,317 - +0.1 622,317 - -1.2 622,434 + +0.1 622,434 + -0.1 622,434 + -0.5 622,435 - -0.4 622,435 - -0.8 622,435 - -0.2 622,442 + -0.8 622,442 + -0.1 622,442 + +1.0 622,442 + -0.3 622,443 - +0.3 622,443 - -0.4 622,619 + +1.1 622,620 - +0.7 622,719 + +0.2 622,719 + +0.4 622,719 + +0.6 622,835 - -0.4 622,835 - +0.1 622,924 + +0.1 622,925 - -0.4 623,343 + GFF895 0.40 -1.3 623,343 + GFF895 0.40 +0.5 623,343 + GFF895 0.40 -0.6 623,343 + GFF895 0.40 -0.2 623,343 + GFF895 0.40 +0.3 623,343 + GFF895 0.40 -1.1 623,344 - GFF895 0.40 -0.1 623,344 - GFF895 0.40 -0.4 623,344 - GFF895 0.40 -2.2 623,366 + GFF895 0.42 -0.5 623,366 + GFF895 0.42 +0.8 623,366 + GFF895 0.42 -0.8 623,366 + GFF895 0.42 -0.6 623,366 + GFF895 0.42 +0.8 623,367 - GFF895 0.42 -0.3 623,367 - GFF895 0.42 -0.2 623,367 - GFF895 0.42 +0.0 623,367 - GFF895 0.42 -0.5 623,367 - GFF895 0.42 -0.5 623,367 - GFF895 0.42 -0.1 623,367 - GFF895 0.42 -0.8 623,486 + GFF895 0.54 +0.5 623,487 - GFF895 0.54 -0.3 623,487 - GFF895 0.54 -0.6 623,487 - GFF895 0.54 +0.2 623,596 - GFF895 0.65 +0.1 623,596 - GFF895 0.65 +0.5 623,596 - GFF895 0.65 -0.5 623,737 + GFF895 0.78 +0.5 623,738 - GFF895 0.78 +0.5 623,738 - GFF895 0.78 +0.2 623,738 - GFF895 0.78 +0.6 623,738 - GFF895 0.78 +1.3 623,738 - GFF895 0.78 -0.5 623,753 + GFF895 0.80 -1.5 623,753 + GFF895 0.80 -0.3 623,753 + GFF895 0.80 -0.5 623,753 + GFF895 0.80 -0.3 623,753 + GFF895 0.80 -0.0 623,753 + GFF895 0.80 +0.2 623,753 + GFF895 0.80 -1.2 623,754 - GFF895 0.80 -1.4 623,754 - GFF895 0.80 -0.1 623,843 - GFF895 0.89 +0.5 623,843 - GFF895 0.89 +0.1 623,924 + +0.7 623,924 + -0.3 623,925 - +0.4 623,925 - +0.4 623,925 - +0.4 623,925 - +0.0 623,925 - +0.0 624,016 + -0.3 624,016 + -0.1 624,016 + +0.1 624,017 - +0.2 624,017 - -0.1 624,017 - +0.5 624,035 + -0.6 624,035 + -0.9 624,035 + -0.6 624,036 - -0.1 624,036 - -0.0 624,036 - +0.2 624,147 - -0.1 624,147 - +0.3 624,147 - -0.0 624,147 - -0.6 624,147 - -0.7 624,148 + +0.0 624,148 + -0.7 624,148 + +0.7 624,148 + -0.5 624,148 + +1.2 624,148 + +0.1 624,148 + +0.1 624,148 + +0.4 624,148 + -0.5 624,149 - +0.5 624,149 - +0.2 624,149 - +0.0 624,149 - -0.1 624,149 - -0.2 624,149 - +0.8 624,149 - +0.1 624,149 - +1.2 624,149 - -0.6 624,149 - +0.1 624,168 - -0.6 624,168 - +0.9 624,209 + +0.4 624,209 + -0.4 624,210 - +0.1 624,210 - -0.0 624,210 - -0.2 624,210 - -0.9 624,210 - -0.4 624,210 - +0.5 624,210 - +0.4 624,210 - +0.0 624,211 + -0.4 624,211 + +0.4 624,211 + +0.7 624,211 + +0.2 624,211 + -0.4 624,211 + +0.2 624,212 - +0.5 624,212 - -0.1 624,212 - +0.1 624,212 - +0.0 624,212 - -0.2 624,212 - +0.1 624,212 - -0.4 624,212 - -0.3 624,212 - -0.4 624,212 - -0.1 624,224 - +0.3 624,224 - +0.6 624,284 + +0.1 624,292 + -0.1 624,443 + +0.7 624,443 + +0.1 624,443 - +1.3 624,456 - -0.4 624,706 + GFF896 0.21 -0.7 624,730 + GFF896 0.22 +0.6 624,730 + GFF896 0.22 -0.0 624,730 + GFF896 0.22 -0.0 624,730 + GFF896 0.22 -0.4 624,730 + GFF896 0.22 -0.1 624,730 + GFF896 0.22 -0.1 624,730 + GFF896 0.22 -0.1 624,730 + GFF896 0.22 +1.4 624,731 - GFF896 0.22 +0.6 624,731 - GFF896 0.22 -0.8 624,731 - GFF896 0.22 -0.1 624,731 - GFF896 0.22 -0.3 624,731 - GFF896 0.22 +0.2 624,731 - GFF896 0.22 +0.9 624,810 + GFF896 0.27 -0.1 624,811 - GFF896 0.27 +0.5 624,811 - GFF896 0.27 +0.3 624,930 + GFF896 0.34 +0.2 624,930 + GFF896 0.34 -0.6 624,930 + GFF896 0.34 -0.3 624,930 + GFF896 0.34 -0.5 624,930 + GFF896 0.34 +0.2 624,931 - GFF896 0.34 -0.1 624,931 - GFF896 0.34 -0.0 624,931 - GFF896 0.34 +0.1
Or see this region's nucleotide sequence