Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF853

Experiment: Ying_sugar7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_sugar7 rep C; time point 1
566,979	+				+0.5
566,979	+				-1.0
566,979	+				+1.2
566,979	+				-0.1
566,979	+				+1.1
566,979	+				-0.2
566,979	+				+0.7
566,980	-				+0.0
566,980	-				-0.4
567,094	+				+0.3
567,095	-				+0.3
567,095	-				-1.0
567,095	-				+0.4
567,153	+				+0.9
567,153	+				+0.5
567,154	-				+0.2
567,154	-				+0.1
567,154	-				+0.2
567,154	-				+0.9
567,154	-				-0.3
567,154	-				-1.2
567,208	-				+0.4
567,208	-				-0.1
567,235	-				+0.3
567,263	+				-0.1
567,263	+				-0.6
567,264	-				+0.5
567,264	-				-0.9
567,264	-				-0.6
567,264	-				-0.7
567,300	+				-0.2
567,300	+				+0.2
567,458	+		GFF852	0.30	-0.5
567,540	+		GFF852	0.43	+0.9
567,540	+		GFF852	0.43	+0.4
567,540	+		GFF852	0.43	+0.2
567,540	+		GFF852	0.43	+0.1
567,540	+		GFF852	0.43	-0.3
567,541	-		GFF852	0.43	+0.2
567,693	-		GFF852	0.67	-0.0
567,706	-		GFF852	0.69	+2.6
567,754	-		GFF852	0.77	-0.2
567,754	-		GFF852	0.77	-0.4
567,835	+		GFF852	0.89	+0.2
567,836	-		GFF852	0.89	+1.4
567,850	-				+0.2
568,011	-		GFF853	0.13	+1.1
568,011	-		GFF853	0.13	+0.2
568,079	+		GFF853	0.35	+0.7
568,099	+		GFF853	0.41	+0.0
568,124	+		GFF853	0.49	-0.2
568,125	-		GFF853	0.49	-0.1
568,125	-		GFF853	0.49	+0.3
568,236	+		GFF853	0.83	+0.0
568,237	-		GFF853	0.84	-0.8
568,318	+				+1.0
568,326	+				-0.5
568,381	+				-1.6
568,381	+				-0.3
568,382	-				-1.5
568,382	-				-0.2
568,405	+				-0.6
568,405	+				-0.0
568,406	-				+0.2
568,425	+				+1.4
568,425	+				-0.2
568,425	+				+0.6
568,426	-				+0.3
568,426	-				-0.1
568,426	-				+0.1
568,426	-				-0.1
568,429	+				+0.2
568,429	+				-0.8
568,430	-				+0.3
568,430	-				+0.6
568,519	+				-0.4
568,519	+				-0.1
568,615	-				+0.1
568,615	-				+0.1
568,615	-				-1.3
568,651	+				-0.2
568,651	+				-0.1
568,652	-				-0.8
568,702	+				-0.2
568,709	+				-0.9
568,709	+				+0.3
568,710	-				-0.7
568,710	-				+0.7
568,710	-				-0.2
568,710	-				-0.9
568,713	+				+0.7
568,713	+				-0.8
568,773	+				+0.6
568,773	+				+0.6
568,774	-				+0.5
568,774	-				+1.1
568,810	+				-0.1
568,810	+				+0.2
568,876	+				+0.1
568,876	+				+0.2
568,920	+				+0.4
568,920	+				+0.3
568,920	+				+0.9
568,921	-				+0.3
568,921	-				-0.2
568,921	-				+0.5
568,999	-				+0.4
569,018	+				-0.6
569,019	+				+0.2
569,019	+				+0.0
569,019	+				-0.1
569,019	+				-0.2
569,020	-				+0.1
569,020	-				+0.0
569,020	-				+0.3
569,020	-				+0.2
569,023	+				+0.5
569,023	+				+0.2
569,023	+				+0.6
569,023	+				+0.6
569,023	+				-0.5
569,023	+				+0.3
569,023	+				+0.2
569,024	-				-0.2
569,024	-				+0.1
569,066	+				+0.2
569,066	+				-1.9
569,066	+				-0.2
569,067	-				+0.2
569,067	-				-0.4
569,113	+				+0.3
569,129	+				+0.6
569,129	+				+1.1
569,130	-				+0.2
569,130	-				+0.1
569,133	+				-0.4
569,133	+				+0.2
569,133	+				+0.2
569,134	-				-0.9
569,134	-				-0.1
569,134	-				-0.2
569,134	-				-0.2
569,134	-				-0.3
569,134	-				+0.2
569,134	-				-0.2
569,134	-				-0.3
569,134	-				+0.3
569,134	-				-1.5
569,150	-				-0.9
569,179	+				-0.1
569,180	-				-0.1
569,180	-				+0.7
569,185	+				-0.5