Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF817

Experiment: Ying_sugar7 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF816 and GFF817 are separated by 20 nucleotidesGFF817 and GFF818 are separated by 36 nucleotidesGFF818 and GFF819 are separated by 259 nucleotides GFF816 - FIG015287: Zinc protease, at 510,930 to 512,267 GFF816 GFF817 - Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-), at 512,288 to 512,902 GFF817 GFF818 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 512,939 to 513,457 GFF818 GFF819 - Peptidyl-tRNA hydrolase (EC 3.1.1.29), at 513,717 to 514,379 GFF819 Position (kb) 512 513Strain fitness (log2 ratio) -2 -1 0 1at 511.473 kb on + strand, within GFF816at 511.473 kb on + strand, within GFF816at 511.488 kb on + strand, within GFF816at 511.488 kb on + strand, within GFF816at 511.488 kb on + strand, within GFF816at 511.489 kb on - strand, within GFF816at 511.489 kb on - strand, within GFF816at 511.489 kb on - strand, within GFF816at 511.495 kb on - strand, within GFF816at 511.552 kb on - strand, within GFF816at 511.552 kb on - strand, within GFF816at 511.806 kb on + strand, within GFF816at 511.806 kb on + strand, within GFF816at 511.806 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.818 kb on + strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.819 kb on - strand, within GFF816at 511.887 kb on + strand, within GFF816at 511.887 kb on + strand, within GFF816at 511.888 kb on - strand, within GFF816at 511.888 kb on - strand, within GFF816at 511.902 kb on + strand, within GFF816at 511.903 kb on - strand, within GFF816at 512.056 kb on - strand, within GFF816at 512.148 kb on + strandat 512.275 kb on + strandat 512.275 kb on + strandat 512.276 kb on - strandat 512.276 kb on - strandat 512.682 kb on + strand, within GFF817at 512.683 kb on - strand, within GFF817at 512.683 kb on - strand, within GFF817at 512.726 kb on + strand, within GFF817at 512.726 kb on + strand, within GFF817at 512.726 kb on + strand, within GFF817at 512.727 kb on - strand, within GFF817at 512.780 kb on + strand, within GFF817at 512.781 kb on - strand, within GFF817at 512.928 kb on + strandat 512.928 kb on + strandat 512.928 kb on + strandat 512.933 kb on + strandat 513.455 kb on + strandat 513.455 kb on + strandat 513.455 kb on + strandat 513.455 kb on + strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.456 kb on - strandat 513.559 kb on + strandat 513.695 kb on - strandat 513.695 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1
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511,473 + GFF816 0.41 +0.5
511,473 + GFF816 0.41 +0.1
511,488 + GFF816 0.42 +0.5
511,488 + GFF816 0.42 +0.7
511,488 + GFF816 0.42 -1.8
511,489 - GFF816 0.42 +0.3
511,489 - GFF816 0.42 -1.5
511,489 - GFF816 0.42 -0.1
511,495 - GFF816 0.42 +0.4
511,552 - GFF816 0.46 -0.2
511,552 - GFF816 0.46 +0.2
511,806 + GFF816 0.65 -0.2
511,806 + GFF816 0.65 +0.4
511,806 + GFF816 0.65 +0.7
511,818 + GFF816 0.66 +0.1
511,818 + GFF816 0.66 +0.8
511,818 + GFF816 0.66 -0.6
511,818 + GFF816 0.66 +0.6
511,818 + GFF816 0.66 +0.2
511,818 + GFF816 0.66 +0.3
511,818 + GFF816 0.66 +1.0
511,819 - GFF816 0.66 +0.2
511,819 - GFF816 0.66 +0.0
511,819 - GFF816 0.66 -0.1
511,819 - GFF816 0.66 +0.5
511,819 - GFF816 0.66 +0.4
511,819 - GFF816 0.66 +0.4
511,887 + GFF816 0.72 +0.7
511,887 + GFF816 0.72 +1.3
511,888 - GFF816 0.72 -0.0
511,888 - GFF816 0.72 +0.5
511,902 + GFF816 0.73 -1.4
511,903 - GFF816 0.73 +0.6
512,056 - GFF816 0.84 -0.8
512,148 + -0.1
512,275 + +0.3
512,275 + -0.5
512,276 - +0.8
512,276 - -0.3
512,682 + GFF817 0.64 -0.1
512,683 - GFF817 0.64 -1.1
512,683 - GFF817 0.64 -0.6
512,726 + GFF817 0.71 -0.9
512,726 + GFF817 0.71 -0.5
512,726 + GFF817 0.71 -0.4
512,727 - GFF817 0.71 -0.2
512,780 + GFF817 0.80 -0.3
512,781 - GFF817 0.80 +0.4
512,928 + -0.5
512,928 + +0.9
512,928 + -1.4
512,933 + +1.2
513,455 + -0.0
513,455 + +0.2
513,455 + -0.3
513,455 + +0.9
513,456 - -0.1
513,456 - +0.6
513,456 - +0.4
513,456 - +0.4
513,456 - -0.1
513,456 - -0.1
513,456 - -0.5
513,456 - -0.2
513,456 - -0.2
513,456 - +0.7
513,559 + -1.8
513,695 - -0.7
513,695 - -1.3

Or see this region's nucleotide sequence