Experiment: Ying_sugar7 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF630 and GFF631 are separated by 187 nucleotides GFF631 and GFF632 overlap by 28 nucleotides
GFF630 - GTP-binding and nucleic acid-binding protein YchF, at 306,643 to 307,734
GFF630
GFF631 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 307,922 to 308,725
GFF631
GFF632 - putative transporter, at 308,698 to 309,876
GFF632
Position (kb) 307
308
309 Strain fitness (log2 ratio) -1
0
1 at 307.463 kb on - strand, within GFF630 at 307.486 kb on + strand, within GFF630 at 307.486 kb on + strand, within GFF630 at 307.486 kb on + strand, within GFF630 at 307.486 kb on + strand, within GFF630 at 307.487 kb on - strand, within GFF630 at 307.487 kb on - strand, within GFF630 at 307.487 kb on - strand, within GFF630 at 307.588 kb on + strand, within GFF630 at 307.588 kb on + strand, within GFF630 at 307.588 kb on + strand, within GFF630 at 307.588 kb on + strand, within GFF630 at 307.588 kb on + strand, within GFF630 at 307.588 kb on + strand, within GFF630 at 307.589 kb on - strand, within GFF630 at 307.589 kb on - strand, within GFF630 at 307.589 kb on - strand, within GFF630 at 307.589 kb on - strand, within GFF630 at 307.589 kb on - strand, within GFF630 at 307.687 kb on + strand at 307.687 kb on + strand at 307.688 kb on - strand at 307.688 kb on - strand at 307.688 kb on - strand at 307.688 kb on - strand at 307.688 kb on - strand at 307.732 kb on + strand at 307.732 kb on + strand at 307.732 kb on + strand at 307.732 kb on + strand at 307.732 kb on + strand at 307.732 kb on + strand at 307.733 kb on - strand at 307.733 kb on - strand at 307.831 kb on + strand at 307.940 kb on - strand at 308.039 kb on + strand, within GFF631 at 308.039 kb on + strand, within GFF631 at 308.039 kb on + strand, within GFF631 at 308.039 kb on + strand, within GFF631 at 308.040 kb on - strand, within GFF631 at 308.040 kb on - strand, within GFF631 at 308.040 kb on - strand, within GFF631 at 308.155 kb on - strand, within GFF631 at 308.700 kb on - strand at 308.855 kb on + strand, within GFF632 at 309.182 kb on + strand, within GFF632 at 309.182 kb on + strand, within GFF632 at 309.183 kb on - strand, within GFF632 at 309.194 kb on + strand, within GFF632 at 309.195 kb on - strand, within GFF632 at 309.584 kb on + strand, within GFF632 at 309.584 kb on + strand, within GFF632 at 309.585 kb on - strand, within GFF632 at 309.585 kb on - strand, within GFF632 at 309.624 kb on - strand, within GFF632 at 309.624 kb on - strand, within GFF632 at 309.624 kb on - strand, within GFF632 at 309.624 kb on - strand, within GFF632
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_sugar7 rep C; time point 1 remove 307,463 - GFF630 0.75 +0.5 307,486 + GFF630 0.77 +0.1 307,486 + GFF630 0.77 +0.7 307,486 + GFF630 0.77 +0.3 307,486 + GFF630 0.77 -0.4 307,487 - GFF630 0.77 -0.9 307,487 - GFF630 0.77 +0.7 307,487 - GFF630 0.77 -0.5 307,588 + GFF630 0.87 +0.7 307,588 + GFF630 0.87 +0.6 307,588 + GFF630 0.87 +0.1 307,588 + GFF630 0.87 -0.6 307,588 + GFF630 0.87 -0.4 307,588 + GFF630 0.87 -0.3 307,589 - GFF630 0.87 -0.5 307,589 - GFF630 0.87 +0.9 307,589 - GFF630 0.87 +0.6 307,589 - GFF630 0.87 -0.1 307,589 - GFF630 0.87 -0.3 307,687 + +0.1 307,687 + -0.3 307,688 - -0.5 307,688 - +1.0 307,688 - +0.4 307,688 - -1.5 307,688 - -0.7 307,732 + -0.8 307,732 + -1.0 307,732 + -0.5 307,732 + +0.4 307,732 + +0.9 307,732 + +0.6 307,733 - +0.1 307,733 - -0.1 307,831 + +1.2 307,940 - -0.1 308,039 + GFF631 0.15 -1.2 308,039 + GFF631 0.15 -0.1 308,039 + GFF631 0.15 +0.7 308,039 + GFF631 0.15 +0.6 308,040 - GFF631 0.15 +0.1 308,040 - GFF631 0.15 -0.4 308,040 - GFF631 0.15 -0.7 308,155 - GFF631 0.29 -0.7 308,700 - -0.1 308,855 + GFF632 0.13 -0.6 309,182 + GFF632 0.41 +0.1 309,182 + GFF632 0.41 +0.8 309,183 - GFF632 0.41 -1.1 309,194 + GFF632 0.42 -0.1 309,195 - GFF632 0.42 -0.1 309,584 + GFF632 0.75 -0.8 309,584 + GFF632 0.75 +0.4 309,585 - GFF632 0.75 +0.2 309,585 - GFF632 0.75 -1.1 309,624 - GFF632 0.79 +0.1 309,624 - GFF632 0.79 +0.4 309,624 - GFF632 0.79 +0.5 309,624 - GFF632 0.79 -0.8
Or see this region's nucleotide sequence